Difference between revisions of "Events:VT-NAMIC-NCBC-Collaboration-meeting-2009"
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** Understand the currently used processing workflow | ** Understand the currently used processing workflow | ||
** Confirm reproducibility of the processing steps between VT and SPL | ** Confirm reproducibility of the processing steps between VT and SPL | ||
− | ** Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results | + | ** Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results (wiki page) |
* To be completed during the meeting | * To be completed during the meeting | ||
** Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy) | ** Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy) |
Revision as of 22:56, 30 September 2009
Home < Events:VT-NAMIC-NCBC-Collaboration-meeting-2009Contents
Logistics
- Confirmed date: Friday, October 9, 2009, 9am-4pm (time is tentative, but room has been reserved, confirmed with Katie MAstrogiacomo)
- Location: 1249 Boylston Street, 2nd floor conference room
Goals
- To be completed or partially completed prior to the meeting by Andriy Fedorov and Ginger Li:
- Provide necessary user- and developer-level Slicer training for Ginger
- Understand the currently used processing workflow
- Confirm reproducibility of the processing steps between VT and SPL
- Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results (wiki page)
- To be completed during the meeting
- Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy)
- Review the available data and current segmentation results
- Develop action timeline for the remaining part of the funded project period
- Discuss publication plans
Agenda
- Review, discuss and finalize the processing workflow (to be discussed and documented by Andriy Fedorov and Ginger Li prior to the meeting Oct 7-8)
- atlas construction
- image pre-processing
- registration
- segmentation
- Review currents results
- Identify Slicer components of the workflow that are ... working, broken, missing
Attendance
Open to all interested parties:
- Chris Wyatt
- Ginger Li
- Ron Kikinis
- Sandy Wells
- Andriy Fedorov
References
TODO: link these
- notes on the current workflow
- registration results
- newly available Slicer modules (registration, mask detection, bias correction)
- atlas construction paper by Styner's group