Difference between revisions of "Tidbits"
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m (Created page with 'To run EMSegmenter from the command line: ./Slicer3-build/lib/Slicer3/Plugins/EMSegmentCommandLine --mrmlSceneFileName ../EMSegmenterT1Example/EMSeg-Brain-MRT1.mrml --targetVolum…') |
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- global so <enter> <br /> | - global so <enter> <br /> | ||
- load spm <enter> <br /> | - load spm <enter> <br /> | ||
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| + | ===nipype install=== | ||
| + | Ubuntu 10.10 install required packages | ||
| + | python-numpy python-nose python-traits ipython | ||
Revision as of 17:24, 10 November 2010
Home < TidbitsTo run EMSegmenter from the command line: ./Slicer3-build/lib/Slicer3/Plugins/EMSegmentCommandLine --mrmlSceneFileName ../EMSegmenterT1Example/EMSeg-Brain-MRT1.mrml --targetVolumeFileNames SPGR-1178.nrrd --resultVolumeFileName 1178_SPGR_emseg.nrrd
Note: To get access to SPM variables in Matlab (while running SPM, of course - bring them into command-line namespace) do this:
- global so <enter>
- load spm <enter>
nipype install
Ubuntu 10.10 install required packages python-numpy python-nose python-traits ipython
