Difference between revisions of "Tidbits"

Latest revision as of 20:10, 13 July 2018

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-To run EMSegmenter from the command line:
-./Slicer3-build/lib/Slicer3/Plugins/EMSegmentCommandLine --mrmlSceneFileName ../EMSegmenterT1Example/EMSeg-Brain-MRT1.mrml --targetVolumeFileNames SPGR-1178.nrrd --resultVolumeFileName 1178_SPGR_emseg.nrrd
-Note: To get access to SPM variables in Matlab (while running SPM, of course - bring them into command-line namespace) do this:<br />
-- global so <enter> <br />
-- load spm <enter> <br />
-===nipype install===
-Ubuntu 10.10 install required packages
-python-numpy python-nose python-traits ipython