Difference between revisions of "Projects:QIN:3D Slicer Annotation Image Markup:Standard Terminology"

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[[Image:RadLex_RID13419.png]]
 
[[Image:RadLex_RID13419.png]]
  
−
=Proposed approach for Slicer LUT terminology mapping=
+
=Mapping Slicer GeneralAnatomy LUT to Standard Terminology (work in progress)=
−
1. Start with the GeneralAnatomy LUT (see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors)
+
Original GeneralAnatomy LUT see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors
  
−
2. Using RadLex browser, identify General Anatomy, Segmented Property Category and Segmented Property Type codes (using the hierarchy) for a subset of the GeneralAnatomy LUT entries
+
{| class="wikitable sortable labelpage labelpagetable" border="1"
 +
! integer_label
 +
! text_label
 +
! color
 +
! notes
 +
|-
 +
|0
 +
|background
 +
|style="background:rgb(0,0,0);color:white"|rgba(0,0,0,0)
 +
|
 +
|-
 +
|1
 +
|tissue
 +
|style="background:rgb(128,174,128)"|rgb(128,174,128)
 +
| Default label for bodily tissues
 +
|-
 +
|2
 +
|bone
 +
|style="background:rgb(241,214,145)"|rgb(241,214,145)
 +
|
 +
|-
 +
|3
 +
|skin
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|4
 +
|connective tissue
 +
|style="background:rgb(111,184,210)"|rgb(111,184,210)
 +
|
 +
|-
 +
|5
 +
|blood
 +
|style="background:rgb(216,101,79)"|rgb(216,101,79)
 +
|
 +
|-
 +
|6
 +
|organ
 +
|style="background:rgb(221,130,101)"|rgb(221,130,101)
 +
|
 +
|-
 +
|7
 +
|mass
 +
|style="background:rgb(144,238,144)"|rgb(144,238,144)
 +
| Could be tumor or other lesion
 +
|-
 +
|8
 +
|muscle
 +
|style="background:rgb(192,104,88)"|rgb(192,104,88)
 +
|
 +
|-
 +
|9
 +
|foreign object
 +
|style="background:rgb(220,245,20)"|rgb(220,245,20)
 +
| Implants, surical instruments, table...
 +
|-
 +
|10
 +
|waste
 +
|style="background:rgb(78,63,0)"|rgb(78,63,0)
 +
|
 +
|-
 +
|11
 +
|teeth
 +
|style="background:rgb(255,250,220)"|rgb(255,250,220)
 +
|
 +
|-
 +
|12
 +
|fat
 +
|style="background:rgb(230,220,70)"|rgb(230,220,70)
 +
|
 +
|-
 +
|13
 +
|gray matter
 +
|style="background:rgb(200,200,235)"|rgb(200,200,235)
 +
|
 +
|-
 +
|14
 +
|white matter
 +
|style="background:rgb(250,250,210)"|rgb(250,250,210)
 +
|
 +
|-
 +
|15
 +
|nerve
 +
|style="background:rgb(244,214,49)"|rgb(244,214,49)
 +
|
 +
|-
 +
|16
 +
|vein
 +
|style="background:rgb(0,151,206)"|rgb(0,151,206)
 +
|
 +
|-
 +
|17
 +
|artery
 +
|style="background:rgb(216,101,79)"|rgb(216,101,79)
 +
|
 +
|-
 +
|18
 +
|capillary
 +
|style="background:rgb(183,156,220)"|rgb(183,156,220)
 +
|
 +
|-
 +
|19
 +
|ligament
 +
|style="background:rgb(183,214,211)"|rgb(183,214,211)
 +
|
 +
|-
 +
|20
 +
|tendon
 +
|style="background:rgb(152,189,207)"|rgb(152,189,207)
 +
|
 +
|-
 +
|21
 +
|cartilage
 +
|style="background:rgb(111,184,210)"|rgb(111,184,210)
 +
|
 +
|-
 +
|22
 +
|meniscus
 +
|style="background:rgb(178,212,242)"|rgb(178,212,242)
 +
|
 +
|-
 +
|23
 +
|lymph node
 +
|style="background:rgb(68,172,100)"|rgb(68,172,100)
 +
|
 +
|-
 +
|24
 +
|lymphatic vessel
 +
|style="background:rgb(111,197,131)"|rgb(111,197,131)
 +
|
 +
|-
 +
|25
 +
|cerebro-spinal fluid
 +
|style="background:rgb(85,188,255)"|rgb(85,188,255)
 +
|
 +
|-
 +
|26
 +
|bile
 +
|style="background:rgb(0,145,30)"|rgb(0,145,30)
 +
|
 +
|-
 +
|27
 +
|urine
 +
|style="background:rgb(214,230,130)"|rgb(214,230,130)
 +
|
 +
|-
 +
|28
 +
|feces
 +
|style="background:rgb(78,63,0)"|rgb(78,63,0)
 +
|
 +
|-
 +
|29
 +
|gas
 +
|style="background:rgb(218,255,255)"|rgb(218,255,255)
 +
|
 +
|-
 +
|30
 +
|fluid
 +
|style="background:rgb(170,250,250)"|rgb(170,250,250)
 +
|
 +
|-
 +
|31
 +
|edema
 +
|style="background:rgb(140,224,228)"|rgb(140,224,228)
 +
|
 +
|-
 +
|32
 +
|bleeding
 +
|style="background:rgb(188,65,28)"|rgb(188,65,28)
 +
|
 +
|-
 +
|33
 +
|necrosis
 +
|style="background:rgb(216,191,216)"|rgb(216,191,216)
 +
|
 +
|-
 +
|34
 +
|clot
 +
|style="background:rgb(145,60,66)"|rgb(145,60,66)
 +
|
 +
|-
 +
|35
 +
|embolism
 +
|style="background:rgb(150,98,83)"|rgb(150,98,83)
 +
|
 +
|-
 +
|36
 +
|head
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|37
 +
|central nervous system
 +
|style="background:rgb(244,214,49)"|rgb(244,214,49)
 +
|
 +
|-
 +
|38
 +
|brain
 +
|style="background:rgb(250,250,225)"|rgb(250,250,225)
 +
|
 +
|-
 +
|39
 +
|gray matter of brain
 +
|style="background:rgb(200,200,215)"|rgb(200,200,215)
 +
|
 +
|-
 +
|40
 +
|telencephalon
 +
|style="background:rgb(68,131,98)"|rgb(68,131,98)
 +
|
 +
|-
 +
|41
 +
|cerebral cortex
 +
|style="background:rgb(128,174,128)"|rgb(128,174,128)
 +
|
 +
|-
 +
|42
 +
|right frontal lobe
 +
|style="background:rgb(83,146,164)"|rgb(83,146,164)
 +
|
 +
|-
 +
|43
 +
|left frontal lobe
 +
|style="background:rgb(83,146,164)"|rgb(83,146,164)
 +
|
 +
|-
 +
|44
 +
|right temporal lobe
 +
|style="background:rgb(162,115,105)"|rgb(162,115,105)
 +
|
 +
|-
 +
|45
 +
|left temporal lobe
 +
|style="background:rgb(162,115,105)"|rgb(162,115,105)
 +
|
 +
|-
 +
|46
 +
|right parietal lobe
 +
|style="background:rgb(141,93,137)"|rgb(141,93,137)
 +
|
 +
|-
 +
|47
 +
|left parietal lobe
 +
|style="background:rgb(141,93,137)"|rgb(141,93,137)
 +
|
 +
|-
 +
|48
 +
|right occipital lobe
 +
|style="background:rgb(182,166,110)"|rgb(182,166,110)
 +
|
 +
|-
 +
|49
 +
|left occipital lobe
 +
|style="background:rgb(182,166,110)"|rgb(182,166,110)
 +
|
 +
|-
 +
|50
 +
|right insular lobe
 +
|style="background:rgb(188,135,166)"|rgb(188,135,166)
 +
|
 +
|-
 +
|51
 +
|left insular lobe
 +
|style="background:rgb(188,135,166)"|rgb(188,135,166)
 +
|
 +
|-
 +
|52
 +
|right limbic lobe
 +
|style="background:rgb(154,150,201)"|rgb(154,150,201)
 +
|
 +
|-
 +
|53
 +
|left limbic lobe
 +
|style="background:rgb(154,150,201)"|rgb(154,150,201)
 +
|
 +
|-
 +
|54
 +
|right striatum
 +
|style="background:rgb(177,140,190)"|rgb(177,140,190)
 +
|
 +
|-
 +
|55
 +
|left striatum
 +
|style="background:rgb(177,140,190)"|rgb(177,140,190)
 +
|
 +
|-
 +
|56
 +
|right caudate nucleus
 +
|style="background:rgb(30,111,85)"|rgb(30,111,85)
 +
|
 +
|-
 +
|57
 +
|left caudate nucleus
 +
|style="background:rgb(30,111,85)"|rgb(30,111,85)
 +
|
 +
|-
 +
|58
 +
|right putamen
 +
|style="background:rgb(210,157,166)"|rgb(210,157,166)
 +
|
 +
|-
 +
|59
 +
|left putamen
 +
|style="background:rgb(210,157,166)"|rgb(210,157,166)
 +
|
 +
|-
 +
|60
 +
|right pallidum
 +
|style="background:rgb(48,129,126)"|rgb(48,129,126)
 +
|
 +
|-
 +
|61
 +
|left pallidum
 +
|style="background:rgb(48,129,126)"|rgb(48,129,126)
 +
|
 +
|-
 +
|62
 +
|right amygdaloid complex
 +
|style="background:rgb(98,153,112)"|rgb(98,153,112)
 +
|
 +
|-
 +
|63
 +
|left amygdaloid complex
 +
|style="background:rgb(98,153,112)"|rgb(98,153,112)
 +
|
 +
|-
 +
|64
 +
|diencephalon
 +
|style="background:rgb(69,110,53)"|rgb(69,110,53)
 +
|
 +
|-
 +
|65
 +
|thalamus
 +
|style="background:rgb(166,113,137)"|rgb(166,113,137)
 +
|
 +
|-
 +
|66
 +
|right thalamus
 +
|style="background:rgb(122,101,38)"|rgb(122,101,38)
 +
|
 +
|-
 +
|67
 +
|left thalamus
 +
|style="background:rgb(122,101,38)"|rgb(122,101,38)
 +
|
 +
|-
 +
|68
 +
|pineal gland
 +
|style="background:rgb(253,135,192)"|rgb(253,135,192)
 +
|
 +
|-
 +
|69
 +
|midbrain
 +
|style="background:rgb(145,92,109)"|rgb(145,92,109)
 +
|
 +
|-
 +
|70
 +
|substantia nigra
 +
|style="background:rgb(46,101,131)"|rgb(46,101,131)
 +
|
 +
|-
 +
|71
 +
|right substantia nigra
 +
|style="background:rgb(0,108,112)"|rgb(0,108,112)
 +
|
 +
|-
 +
|72
 +
|left substantia nigra
 +
|style="background:rgb(0,108,112)"|rgb(0,108,112)
 +
|
 +
|-
 +
|73
 +
|cerebral white matter
 +
|style="background:rgb(250,250,225)"|rgb(250,250,225)
 +
|
 +
|-
 +
|74
 +
|right superior longitudinal fasciculus
 +
|style="background:rgb(127,150,88)"|rgb(127,150,88)
 +
|
 +
|-
 +
|75
 +
|left superior longitudinal fasciculus
 +
|style="background:rgb(127,150,88)"|rgb(127,150,88)
 +
|
 +
|-
 +
|76
 +
|right inferior longitudinal fasciculus
 +
|style="background:rgb(159,116,163)"|rgb(159,116,163)
 +
|
 +
|-
 +
|77
 +
|left inferior longitudinal fasciculus
 +
|style="background:rgb(159,116,163)"|rgb(159,116,163)
 +
|
 +
|-
 +
|78
 +
|right arcuate fasciculus
 +
|style="background:rgb(125,102,154)"|rgb(125,102,154)
 +
|
 +
|-
 +
|79
 +
|left arcuate fasciculus
 +
|style="background:rgb(125,102,154)"|rgb(125,102,154)
 +
|
 +
|-
 +
|80
 +
|right uncinate fasciculus
 +
|style="background:rgb(106,174,155)"|rgb(106,174,155)
 +
|
 +
|-
 +
|81
 +
|left uncinate fasciculus
 +
|style="background:rgb(106,174,155)"|rgb(106,174,155)
 +
|
 +
|-
 +
|82
 +
|right cingulum bundle
 +
|style="background:rgb(154,146,83)"|rgb(154,146,83)
 +
|
 +
|-
 +
|83
 +
|left cingulum bundle
 +
|style="background:rgb(154,146,83)"|rgb(154,146,83)
 +
|
 +
|-
 +
|84
 +
|projection fibers
 +
|style="background:rgb(126,126,55)"|rgb(126,126,55)
 +
|
 +
|-
 +
|85
 +
|right corticospinal tract
 +
|style="background:rgb(201,160,133)"|rgb(201,160,133)
 +
|
 +
|-
 +
|86
 +
|left corticospinal tract
 +
|style="background:rgb(201,160,133)"|rgb(201,160,133)
 +
|
 +
|-
 +
|87
 +
|right optic radiation
 +
|style="background:rgb(78,152,141)"|rgb(78,152,141)
 +
|
 +
|-
 +
|88
 +
|left optic radiation
 +
|style="background:rgb(78,152,141)"|rgb(78,152,141)
 +
|
 +
|-
 +
|89
 +
|right medial lemniscus
 +
|style="background:rgb(174,140,103)"|rgb(174,140,103)
 +
|
 +
|-
 +
|90
 +
|left medial lemniscus
 +
|style="background:rgb(174,140,103)"|rgb(174,140,103)
 +
|
 +
|-
 +
|91
 +
|right superior cerebellar peduncle
 +
|style="background:rgb(139,126,177)"|rgb(139,126,177)
 +
|
 +
|-
 +
|92
 +
|left superior cerebellar peduncle
 +
|style="background:rgb(139,126,177)"|rgb(139,126,177)
 +
|
 +
|-
 +
|93
 +
|right middle cerebellar peduncle
 +
|style="background:rgb(148,120,72)"|rgb(148,120,72)
 +
|
 +
|-
 +
|94
 +
|left middle cerebellar peduncle
 +
|style="background:rgb(148,120,72)"|rgb(148,120,72)
 +
|
 +
|-
 +
|95
 +
|right inferior cerebellar peduncle
 +
|style="background:rgb(186,135,135)"|rgb(186,135,135)
 +
|
 +
|-
 +
|96
 +
|left inferior cerebellar peduncle
 +
|style="background:rgb(186,135,135)"|rgb(186,135,135)
 +
|
 +
|-
 +
|97
 +
|optic chiasm
 +
|style="background:rgb(99,106,24)"|rgb(99,106,24)
 +
|
 +
|-
 +
|98
 +
|right optic tract
 +
|style="background:rgb(156,171,108)"|rgb(156,171,108)
 +
|
 +
|-
 +
|99
 +
|left optic tract
 +
|style="background:rgb(156,171,108)"|rgb(156,171,108)
 +
|
 +
|-
 +
|100
 +
|right fornix
 +
|style="background:rgb(64,123,147)"|rgb(64,123,147)
 +
|
 +
|-
 +
|101
 +
|left fornix
 +
|style="background:rgb(64,123,147)"|rgb(64,123,147)
 +
|
 +
|-
 +
|102
 +
|commissural fibers
 +
|style="background:rgb(138,95,74)"|rgb(138,95,74)
 +
|
 +
|-
 +
|103
 +
|corpus callosum
 +
|style="background:rgb(97,113,158)"|rgb(97,113,158)
 +
|
 +
|-
 +
|104
 +
|posterior commissure
 +
|style="background:rgb(126,161,197)"|rgb(126,161,197)
 +
|
 +
|-
 +
|105
 +
|cerebellar white matter
 +
|style="background:rgb(194,195,164)"|rgb(194,195,164)
 +
|
 +
|-
 +
|106
 +
|CSF space
 +
|style="background:rgb(85,188,255)"|rgb(85,188,255)
 +
|
 +
|-
 +
|107
 +
|ventricles of brain
 +
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 +
|
 +
|-
 +
|108
 +
|right lateral ventricle
 +
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 +
|
 +
|-
 +
|109
 +
|left lateral ventricle
 +
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 +
|
 +
|-
 +
|110
 +
|right third ventricle
 +
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 +
|
 +
|-
 +
|111
 +
|left third ventricle
 +
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 +
|
 +
|-
 +
|112
 +
|cerebral aqueduct
 +
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 +
|
 +
|-
 +
|113
 +
|fourth ventricle
 +
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 +
|
 +
|-
 +
|114
 +
|subarachnoid space
 +
|style="background:rgb(88,106,215)"|rgb(88,106,215)
 +
|
 +
|-
 +
|115
 +
|spinal cord
 +
|style="background:rgb(244,214,49)"|rgb(244,214,49)
 +
|
 +
|-
 +
|116
 +
|gray matter of spinal cord
 +
|style="background:rgb(200,200,215)"|rgb(200,200,215)
 +
|
 +
|-
 +
|117
 +
|white matter of spinal cord
 +
|style="background:rgb(250,250,225)"|rgb(250,250,225)
 +
|
 +
|-
 +
|118
 +
|endocrine system of brain
 +
|style="background:rgb(82,174,128)"|rgb(82,174,128)
 +
|
 +
|-
 +
|119
 +
|pituitary gland
 +
|style="background:rgb(57,157,110)"|rgb(57,157,110)
 +
|
 +
|-
 +
|120
 +
|adenohypophysis
 +
|style="background:rgb(60,143,83)"|rgb(60,143,83)
 +
|
 +
|-
 +
|121
 +
|neurohypophysis
 +
|style="background:rgb(92,162,109)"|rgb(92,162,109)
 +
|
 +
|-
 +
|122
 +
|meninges
 +
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 +
|
 +
|-
 +
|123
 +
|dura mater
 +
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 +
|
 +
|-
 +
|124
 +
|arachnoid
 +
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 +
|
 +
|-
 +
|125
 +
|pia mater
 +
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 +
|
 +
|-
 +
|126
 +
|muscles of head
 +
|style="background:rgb(201,121,77)"|rgb(201,121,77)
 +
|
 +
|-
 +
|127
 +
|salivary glands
 +
|style="background:rgb(70,163,117)"|rgb(70,163,117)
 +
|
 +
|-
 +
|128
 +
|lips
 +
|style="background:rgb(188,91,95)"|rgb(188,91,95)
 +
|
 +
|-
 +
|129
 +
|nose
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|130
 +
|tongue
 +
|style="background:rgb(166,84,94)"|rgb(166,84,94)
 +
|
 +
|-
 +
|131
 +
|soft palate
 +
|style="background:rgb(182,105,107)"|rgb(182,105,107)
 +
|
 +
|-
 +
|132
 +
|right inner ear
 +
|style="background:rgb(229,147,118)"|rgb(229,147,118)
 +
|
 +
|-
 +
|133
 +
|left inner ear
 +
|style="background:rgb(229,147,118)"|rgb(229,147,118)
 +
|
 +
|-
 +
|134
 +
|right external ear
 +
|style="background:rgb(174,122,90)"|rgb(174,122,90)
 +
|
 +
|-
 +
|135
 +
|left external ear
 +
|style="background:rgb(174,122,90)"|rgb(174,122,90)
 +
|
 +
|-
 +
|136
 +
|right middle ear
 +
|style="background:rgb(201,112,73)"|rgb(201,112,73)
 +
|
 +
|-
 +
|137
 +
|left middle ear
 +
|style="background:rgb(201,112,73)"|rgb(201,112,73)
 +
|
 +
|-
 +
|138
 +
|right eyeball
 +
|style="background:rgb(194,142,0)"|rgb(194,142,0)
 +
|
 +
|-
 +
|139
 +
|left eyeball
 +
|style="background:rgb(194,142,0)"|rgb(194,142,0)
 +
|
 +
|-
 +
|140
 +
|skull
 +
|style="background:rgb(241,213,144)"|rgb(241,213,144)
 +
|
 +
|-
 +
|141
 +
|right frontal bone
 +
|style="background:rgb(203,179,77)"|rgb(203,179,77)
 +
|
 +
|-
 +
|142
 +
|left frontal bone
 +
|style="background:rgb(203,179,77)"|rgb(203,179,77)
 +
|
 +
|-
 +
|143
 +
|right parietal bone
 +
|style="background:rgb(229,204,109)"|rgb(229,204,109)
 +
|
 +
|-
 +
|144
 +
|left parietal bone
 +
|style="background:rgb(229,204,109)"|rgb(229,204,109)
 +
|
 +
|-
 +
|145
 +
|right temporal bone
 +
|style="background:rgb(255,243,152)"|rgb(255,243,152)
 +
|
 +
|-
 +
|146
 +
|left temporal bone
 +
|style="background:rgb(255,243,152)"|rgb(255,243,152)
 +
|
 +
|-
 +
|147
 +
|right sphenoid bone
 +
|style="background:rgb(209,185,85)"|rgb(209,185,85)
 +
|
 +
|-
 +
|148
 +
|left sphenoid bone
 +
|style="background:rgb(209,185,85)"|rgb(209,185,85)
 +
|
 +
|-
 +
|149
 +
|right ethmoid bone
 +
|style="background:rgb(248,223,131)"|rgb(248,223,131)
 +
|
 +
|-
 +
|150
 +
|left ethmoid bone
 +
|style="background:rgb(248,223,131)"|rgb(248,223,131)
 +
|
 +
|-
 +
|151
 +
|occipital bone
 +
|style="background:rgb(255,230,138)"|rgb(255,230,138)
 +
|
 +
|-
 +
|152
 +
|maxilla
 +
|style="background:rgb(196,172,68)"|rgb(196,172,68)
 +
|
 +
|-
 +
|153
 +
|right zygomatic bone
 +
|style="background:rgb(255,255,167)"|rgb(255,255,167)
 +
|
 +
|-
 +
|154
 +
|right lacrimal bone
 +
|style="background:rgb(255,250,160)"|rgb(255,250,160)
 +
|
 +
|-
 +
|155
 +
|vomer bone
 +
|style="background:rgb(255,237,145)"|rgb(255,237,145)
 +
|
 +
|-
 +
|156
 +
|right palatine bone
 +
|style="background:rgb(242,217,123)"|rgb(242,217,123)
 +
|
 +
|-
 +
|157
 +
|left palatine bone
 +
|style="background:rgb(242,217,123)"|rgb(242,217,123)
 +
|
 +
|-
 +
|158
 +
|mandible
 +
|style="background:rgb(222,198,101)"|rgb(222,198,101)
 +
|
 +
|-
 +
|159
 +
|neck
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|160
 +
|muscles of neck
 +
|style="background:rgb(213,124,109)"|rgb(213,124,109)
 +
|
 +
|-
 +
|161
 +
|pharynx
 +
|style="background:rgb(184,105,108)"|rgb(184,105,108)
 +
|
 +
|-
 +
|162
 +
|larynx
 +
|style="background:rgb(150,208,243)"|rgb(150,208,243)
 +
|
 +
|-
 +
|163
 +
|thyroid gland
 +
|style="background:rgb(62,162,114)"|rgb(62,162,114)
 +
|
 +
|-
 +
|164
 +
|right parathyroid glands
 +
|style="background:rgb(62,162,114)"|rgb(62,162,114)
 +
|
 +
|-
 +
|165
 +
|left parathyroid glands
 +
|style="background:rgb(62,162,114)"|rgb(62,162,114)
 +
|
 +
|-
 +
|166
 +
|skeleton of neck
 +
|style="background:rgb(242,206,142)"|rgb(242,206,142)
 +
|
 +
|-
 +
|167
 +
|hyoid bone
 +
|style="background:rgb(250,210,139)"|rgb(250,210,139)
 +
|
 +
|-
 +
|168
 +
|cervical vertebral column
 +
|style="background:rgb(255,255,207)"|rgb(255,255,207)
 +
|
 +
|-
 +
|169
 +
|thorax
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|170
 +
|trachea
 +
|style="background:rgb(182,228,255)"|rgb(182,228,255)
 +
|
 +
|-
 +
|171
 +
|bronchi
 +
|style="background:rgb(175,216,244)"|rgb(175,216,244)
 +
|
 +
|-
 +
|172
 +
|right lung
 +
|style="background:rgb(197,165,145)"|rgb(197,165,145)
 +
|
 +
|-
 +
|173
 +
|left lung
 +
|style="background:rgb(197,165,145)"|rgb(197,165,145)
 +
|
 +
|-
 +
|174
 +
|superior lobe of right lung
 +
|style="background:rgb(172,138,115)"|rgb(172,138,115)
 +
|
 +
|-
 +
|175
 +
|superior lobe of left lung
 +
|style="background:rgb(172,138,115)"|rgb(172,138,115)
 +
|
 +
|-
 +
|176
 +
|middle lobe of right lung
 +
|style="background:rgb(202,164,140)"|rgb(202,164,140)
 +
|
 +
|-
 +
|177
 +
|inferior lobe of right lung
 +
|style="background:rgb(224,186,162)"|rgb(224,186,162)
 +
|
 +
|-
 +
|178
 +
|inferior lobe of left lung
 +
|style="background:rgb(224,186,162)"|rgb(224,186,162)
 +
|
 +
|-
 +
|179
 +
|pleura
 +
|style="background:rgb(255,245,217)"|rgb(255,245,217)
 +
|
 +
|-
 +
|180
 +
|heart
 +
|style="background:rgb(206,110,84)"|rgb(206,110,84)
 +
|
 +
|-
 +
|181
 +
|right atrium
 +
|style="background:rgb(210,115,89)"|rgb(210,115,89)
 +
|
 +
|-
 +
|182
 +
|left atrium
 +
|style="background:rgb(203,108,81)"|rgb(203,108,81)
 +
|
 +
|-
 +
|183
 +
|atrial septum
 +
|style="background:rgb(233,138,112)"|rgb(233,138,112)
 +
|
 +
|-
 +
|184
 +
|ventricular septum
 +
|style="background:rgb(195,100,73)"|rgb(195,100,73)
 +
|
 +
|-
 +
|185
 +
|right ventricle of heart
 +
|style="background:rgb(181,85,57)"|rgb(181,85,57)
 +
|
 +
|-
 +
|186
 +
|left ventricle of heart
 +
|style="background:rgb(152,55,13)"|rgb(152,55,13)
 +
|
 +
|-
 +
|187
 +
|mitral valve
 +
|style="background:rgb(159,63,27)"|rgb(159,63,27)
 +
|
 +
|-
 +
|188
 +
|tricuspid valve
 +
|style="background:rgb(166,70,38)"|rgb(166,70,38)
 +
|
 +
|-
 +
|189
 +
|aortic valve
 +
|style="background:rgb(218,123,97)"|rgb(218,123,97)
 +
|
 +
|-
 +
|190
 +
|pulmonary valve
 +
|style="background:rgb(225,130,104)"|rgb(225,130,104)
 +
|
 +
|-
 +
|191
 +
|aorta
 +
|style="background:rgb(224,97,76)"|rgb(224,97,76)
 +
|
 +
|-
 +
|192
 +
|pericardium
 +
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 +
|
 +
|-
 +
|193
 +
|pericardial cavity
 +
|style="background:rgb(184,122,154)"|rgb(184,122,154)
 +
|
 +
|-
 +
|194
 +
|esophagus
 +
|style="background:rgb(211,171,143)"|rgb(211,171,143)
 +
|
 +
|-
 +
|195
 +
|thymus
 +
|style="background:rgb(47,150,103)"|rgb(47,150,103)
 +
|
 +
|-
 +
|196
 +
|mediastinum
 +
|style="background:rgb(255,244,209)"|rgb(255,244,209)
 +
|
 +
|-
 +
|197
 +
|skin of thoracic wall
 +
|style="background:rgb(173,121,88)"|rgb(173,121,88)
 +
|
 +
|-
 +
|198
 +
|muscles of thoracic wall
 +
|style="background:rgb(188,95,76)"|rgb(188,95,76)
 +
|
 +
|-
 +
|199
 +
|skeleton of thorax
 +
|style="background:rgb(255,239,172)"|rgb(255,239,172)
 +
|
 +
|-
 +
|200
 +
|thoracic vertebral column
 +
|style="background:rgb(226,202,134)"|rgb(226,202,134)
 +
|
 +
|-
 +
|201
 +
|ribs
 +
|style="background:rgb(253,232,158)"|rgb(253,232,158)
 +
|
 +
|-
 +
|202
 +
|sternum
 +
|style="background:rgb(244,217,154)"|rgb(244,217,154)
 +
|
 +
|-
 +
|203
 +
|right clavicle
 +
|style="background:rgb(205,179,108)"|rgb(205,179,108)
 +
|
 +
|-
 +
|204
 +
|left clavicle
 +
|style="background:rgb(205,179,108)"|rgb(205,179,108)
 +
|
 +
|-
 +
|205
 +
|abdominal cavity
 +
|style="background:rgb(186,124,161)"|rgb(186,124,161)
 +
|
 +
|-
 +
|206
 +
|abdomen
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|207
 +
|peritoneum
 +
|style="background:rgb(255,255,220)"|rgb(255,255,220)
 +
|
 +
|-
 +
|208
 +
|omentum
 +
|style="background:rgb(234,234,194)"|rgb(234,234,194)
 +
|
 +
|-
 +
|209
 +
|peritoneal cavity
 +
|style="background:rgb(204,142,178)"|rgb(204,142,178)
 +
|
 +
|-
 +
|210
 +
|retroperitoneal space
 +
|style="background:rgb(180,119,153)"|rgb(180,119,153)
 +
|
 +
|-
 +
|211
 +
|stomach
 +
|style="background:rgb(216,132,105)"|rgb(216,132,105)
 +
|
 +
|-
 +
|212
 +
|duodenum
 +
|style="background:rgb(255,253,229)"|rgb(255,253,229)
 +
|
 +
|-
 +
|213
 +
|small bowel
 +
|style="background:rgb(205,167,142)"|rgb(205,167,142)
 +
|
 +
|-
 +
|214
 +
|colon
 +
|style="background:rgb(204,168,143)"|rgb(204,168,143)
 +
|
 +
|-
 +
|215
 +
|anus
 +
|style="background:rgb(255,224,199)"|rgb(255,224,199)
 +
|
 +
|-
 +
|216
 +
|liver
 +
|style="background:rgb(221,130,101)"|rgb(221,130,101)
 +
|
 +
|-
 +
|217
 +
|biliary tree
 +
|style="background:rgb(0,145,30)"|rgb(0,145,30)
 +
|
 +
|-
 +
|218
 +
|gallbladder
 +
|style="background:rgb(139,150,98)"|rgb(139,150,98)
 +
|
 +
|-
 +
|219
 +
|pancreas
 +
|style="background:rgb(249,180,111)"|rgb(249,180,111)
 +
|
 +
|-
 +
|220
 +
|spleen
 +
|style="background:rgb(157,108,162)"|rgb(157,108,162)
 +
|
 +
|-
 +
|221
 +
|urinary system
 +
|style="background:rgb(203,136,116)"|rgb(203,136,116)
 +
|
 +
|-
 +
|222
 +
|right kidney
 +
|style="background:rgb(185,102,83)"|rgb(185,102,83)
 +
|
 +
|-
 +
|223
 +
|left kidney
 +
|style="background:rgb(185,102,83)"|rgb(185,102,83)
 +
|
 +
|-
 +
|224
 +
|right ureter
 +
|style="background:rgb(247,182,164)"|rgb(247,182,164)
 +
|
 +
|-
 +
|225
 +
|left ureter
 +
|style="background:rgb(247,182,164)"|rgb(247,182,164)
 +
|
 +
|-
 +
|226
 +
|urinary bladder
 +
|style="background:rgb(222,154,132)"|rgb(222,154,132)
 +
|
 +
|-
 +
|227
 +
|urethra
 +
|style="background:rgb(124,186,223)"|rgb(124,186,223)
 +
|
 +
|-
 +
|228
 +
|right adrenal gland
 +
|style="background:rgb(249,186,150)"|rgb(249,186,150)
 +
|
 +
|-
 +
|229
 +
|left adrenal gland
 +
|style="background:rgb(249,186,150)"|rgb(249,186,150)
 +
|
 +
|-
 +
|230
 +
|female internal genitalia
 +
|style="background:rgb(244,170,147)"|rgb(244,170,147)
 +
|
 +
|-
 +
|231
 +
|uterus
 +
|style="background:rgb(255,181,158)"|rgb(255,181,158)
 +
|
 +
|-
 +
|232
 +
|right fallopian tube
 +
|style="background:rgb(255,190,165)"|rgb(255,190,165)
 +
|
 +
|-
 +
|233
 +
|left fallopian tube
 +
|style="background:rgb(227,153,130)"|rgb(227,153,130)
 +
|
 +
|-
 +
|234
 +
|right ovary
 +
|style="background:rgb(213,141,113)"|rgb(213,141,113)
 +
|
 +
|-
 +
|235
 +
|left ovary
 +
|style="background:rgb(213,141,113)"|rgb(213,141,113)
 +
|
 +
|-
 +
|236
 +
|vagina
 +
|style="background:rgb(193,123,103)"|rgb(193,123,103)
 +
|
 +
|-
 +
|237
 +
|male internal genitalia
 +
|style="background:rgb(216,146,127)"|rgb(216,146,127)
 +
|
 +
|-
 +
|238
 +
|prostate
 +
|style="background:rgb(230,158,140)"|rgb(230,158,140)
 +
|
 +
|-
 +
|239
 +
|right seminal vesicle
 +
|style="background:rgb(245,172,147)"|rgb(245,172,147)
 +
|
 +
|-
 +
|240
 +
|left seminal vesicle
 +
|style="background:rgb(245,172,147)"|rgb(245,172,147)
 +
|
 +
|-
 +
|241
 +
|right deferent duct
 +
|style="background:rgb(241,172,151)"|rgb(241,172,151)
 +
|
 +
|-
 +
|242
 +
|left deferent duct
 +
|style="background:rgb(241,172,151)"|rgb(241,172,151)
 +
|
 +
|-
 +
|243
 +
|skin of abdominal wall
 +
|style="background:rgb(177,124,92)"|rgb(177,124,92)
 +
|
 +
|-
 +
|244
 +
|muscles of abdominal wall
 +
|style="background:rgb(171,85,68)"|rgb(171,85,68)
 +
|
 +
|-
 +
|245
 +
|skeleton of abdomen
 +
|style="background:rgb(217,198,131)"|rgb(217,198,131)
 +
|
 +
|-
 +
|246
 +
|lumbar vertebral column
 +
|style="background:rgb(212,188,102)"|rgb(212,188,102)
 +
|
 +
|-
 +
|247
 +
|female external genitalia
 +
|style="background:rgb(185,135,134)"|rgb(185,135,134)
 +
|
 +
|-
 +
|248
 +
|male external genitalia
 +
|style="background:rgb(185,135,134)"|rgb(185,135,134)
 +
|
 +
|-
 +
|249
 +
|skeleton of upper limb
 +
|style="background:rgb(198,175,125)"|rgb(198,175,125)
 +
|
 +
|-
 +
|250
 +
|muscles of upper limb
 +
|style="background:rgb(194,98,79)"|rgb(194,98,79)
 +
|
 +
|-
 +
|251
 +
|right upper limb
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|252
 +
|left upper limb
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|253
 +
|right shoulder
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|254
 +
|left shoulder
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|255
 +
|right arm
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|256
 +
|left arm
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|257
 +
|right elbow
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|258
 +
|left elbow
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|259
 +
|right forearm
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|260
 +
|left forearm
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|261
 +
|right wrist
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|262
 +
|left wrist
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|263
 +
|right hand
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|264
 +
|left hand
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|265
 +
|skeleton of lower limb
 +
|style="background:rgb(255,238,170)"|rgb(255,238,170)
 +
|
 +
|-
 +
|266
 +
|muscles of lower limb
 +
|style="background:rgb(206,111,93)"|rgb(206,111,93)
 +
|
 +
|-
 +
|267
 +
|right lower limb
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|268
 +
|left lower limb
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|269
 +
|right hip
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|270
 +
|left hip
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|271
 +
|right thigh
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|272
 +
|left thigh
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|273
 +
|right knee
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|274
 +
|left knee
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|275
 +
|right leg
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|276
 +
|left leg
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|277
 +
|right foot
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|278
 +
|left foot
 +
|style="background:rgb(177,122,101)"|rgb(177,122,101)
 +
|
 +
|-
 +
|279
 +
|peripheral nervous system
 +
|style="background:rgb(216,186,0)"|rgb(216,186,0)
 +
|
 +
|-
 +
|280
 +
|autonomic nerve
 +
|style="background:rgb(255,226,77)"|rgb(255,226,77)
 +
|
 +
|-
 +
|281
 +
|sympathetic trunk
 +
|style="background:rgb(255,243,106)"|rgb(255,243,106)
 +
|
 +
|-
 +
|282
 +
|cranial nerves
 +
|style="background:rgb(255,234,92)"|rgb(255,234,92)
 +
|
 +
|-
 +
|283
 +
|vagus nerve
 +
|style="background:rgb(240,210,35)"|rgb(240,210,35)
 +
|
 +
|-
 +
|284
 +
|peripheral nerve
 +
|style="background:rgb(224,194,0)"|rgb(224,194,0)
 +
|
 +
|-
 +
|285
 +
|circulatory system
 +
|style="background:rgb(213,99,79)"|rgb(213,99,79)
 +
|
 +
|-
 +
|286
 +
|systemic arterial system
 +
|style="background:rgb(217,102,81)"|rgb(217,102,81)
 +
|
 +
|-
 +
|287
 +
|systemic venous system
 +
|style="background:rgb(0,147,202)"|rgb(0,147,202)
 +
|
 +
|-
 +
|288
 +
|pulmonary arterial system
 +
|style="background:rgb(0,122,171)"|rgb(0,122,171)
 +
|
 +
|-
 +
|289
 +
|pulmonary venous system
 +
|style="background:rgb(186,77,64)"|rgb(186,77,64)
 +
|
 +
|-
 +
|290
 +
|lymphatic system
 +
|style="background:rgb(111,197,131)"|rgb(111,197,131)
 +
|
 +
|-
 +
|291
 +
|needle
 +
|style="background:rgb(240,255,30)"|rgb(240,255,30)
 +
|
 +
|-
 +
|292
 +
|region 0
 +
|style="background:rgb(185,232,61)"|rgb(185,232,61)
 +
|
 +
|-
 +
|293
 +
|region 1
 +
|style="background:rgb(0,226,255)"|rgb(0,226,255)
 +
|
 +
|-
 +
|294
 +
|region 2
 +
|style="background:rgb(251,159,255)"|rgb(251,159,255)
 +
|
 +
|-
 +
|295
 +
|region 3
 +
|style="background:rgb(230,169,29)"|rgb(230,169,29)
 +
|
 +
|-
 +
|296
 +
|region 4
 +
|style="background:rgb(0,194,113)"|rgb(0,194,113)
 +
|
 +
|-
 +
|297
 +
|region 5
 +
|style="background:rgb(104,160,249)"|rgb(104,160,249)
 +
|
 +
|-
 +
|298
 +
|region 6
 +
|style="background:rgb(221,108,158)"|rgb(221,108,158)
 +
|
 +
|-
 +
|299
 +
|region 7
 +
|style="background:rgb(137,142,0)"|rgb(137,142,0)
 +
|
 +
|-
 +
|300
 +
|region 8
 +
|style="background:rgb(230,70,0)"|rgb(230,70,0)
 +
|
 +
|-
 +
|301
 +
|region 9
 +
|style="background:rgb(0,147,0)"|rgb(0,147,0)
 +
|
 +
|-
 +
|302
 +
|region 10
 +
|style="background:rgb(0,147,248)"|rgb(0,147,248)
 +
|
 +
|-
 +
|303
 +
|region 11
 +
|style="background:rgb(231,0,206)"|rgb(231,0,206)
 +
|
 +
|-
 +
|304
 +
|region 12
 +
|style="background:rgb(129,78,0)"|rgb(129,78,0)
 +
|
 +
|-
 +
|305
 +
|region 13
 +
|style="background:rgb(0,116,0)"|rgb(0,116,0)
 +
|
 +
|-
 +
|306
 +
|region 14
 +
|style="background:rgb(0,0,255)"|rgb(0,0,255)
 +
|
 +
|-
 +
|307
 +
|region 15
 +
|style="background:rgb(157,0,0)"|rgb(157,0,0)
 +
|
 +
|-
 +
|308
 +
|unknown
 +
|style="background:rgb(100,100,130)"|rgb(100,100,130)
 +
|
 +
|-
 +
|309
 +
|cyst
 +
|style="background:rgb(205,205,100)"|rgb(205,205,100)
 +
|
 +
|-
 +
|}
  
−
3. Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in [http://en.wikipedia.org/wiki/Lab_color_space CIALab]).
+
Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in [http://en.wikipedia.org/wiki/Lab_color_space CIALab]).

Revision as of 03:41, 18 September 2012

Home < Projects:QIN:3D Slicer Annotation Image Markup:Standard Terminology

This is a collection of relevant pieces from:

Segmentation image module attributes

Segmentation image module attributes must in particular include the following (PS 3.3-2011, p.989):

PS3.3-SegmentationAttributes.png

PS3.3-CodedEntryData.png

Code sequence attributes

PS3.3-CodeSequenceAttributes.png

General Anatomy Macro

The General Anatomy Macro is defined as follows (PS 3.3-2011, p.96):

PS3.3-GeneralAnatomyMacro.png

Coding Scheme Designators

PS3.3-CodingSchemeDesignators1.png

PS3.3-CodingSchemeDesignators2.png

NOTE: this table is incomplete, consult PS 3.16-2011 p.43.

RadLex

RadLex RID13419.png

Mapping Slicer GeneralAnatomy LUT to Standard Terminology (work in progress)

Original GeneralAnatomy LUT see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors

integer_label text_label color notes
0 background rgba(0,0,0,0)
1 tissue rgb(128,174,128) Default label for bodily tissues
2 bone rgb(241,214,145)
3 skin rgb(177,122,101)
4 connective tissue rgb(111,184,210)
5 blood rgb(216,101,79)
6 organ rgb(221,130,101)
7 mass rgb(144,238,144) Could be tumor or other lesion
8 muscle rgb(192,104,88)
9 foreign object rgb(220,245,20) Implants, surical instruments, table...
10 waste rgb(78,63,0)
11 teeth rgb(255,250,220)
12 fat rgb(230,220,70)
13 gray matter rgb(200,200,235)
14 white matter rgb(250,250,210)
15 nerve rgb(244,214,49)
16 vein rgb(0,151,206)
17 artery rgb(216,101,79)
18 capillary rgb(183,156,220)
19 ligament rgb(183,214,211)
20 tendon rgb(152,189,207)
21 cartilage rgb(111,184,210)
22 meniscus rgb(178,212,242)
23 lymph node rgb(68,172,100)
24 lymphatic vessel rgb(111,197,131)
25 cerebro-spinal fluid rgb(85,188,255)
26 bile rgb(0,145,30)
27 urine rgb(214,230,130)
28 feces rgb(78,63,0)
29 gas rgb(218,255,255)
30 fluid rgb(170,250,250)
31 edema rgb(140,224,228)
32 bleeding rgb(188,65,28)
33 necrosis rgb(216,191,216)
34 clot rgb(145,60,66)
35 embolism rgb(150,98,83)
36 head rgb(177,122,101)
37 central nervous system rgb(244,214,49)
38 brain rgb(250,250,225)
39 gray matter of brain rgb(200,200,215)
40 telencephalon rgb(68,131,98)
41 cerebral cortex rgb(128,174,128)
42 right frontal lobe rgb(83,146,164)
43 left frontal lobe rgb(83,146,164)
44 right temporal lobe rgb(162,115,105)
45 left temporal lobe rgb(162,115,105)
46 right parietal lobe rgb(141,93,137)
47 left parietal lobe rgb(141,93,137)
48 right occipital lobe rgb(182,166,110)
49 left occipital lobe rgb(182,166,110)
50 right insular lobe rgb(188,135,166)
51 left insular lobe rgb(188,135,166)
52 right limbic lobe rgb(154,150,201)
53 left limbic lobe rgb(154,150,201)
54 right striatum rgb(177,140,190)
55 left striatum rgb(177,140,190)
56 right caudate nucleus rgb(30,111,85)
57 left caudate nucleus rgb(30,111,85)
58 right putamen rgb(210,157,166)
59 left putamen rgb(210,157,166)
60 right pallidum rgb(48,129,126)
61 left pallidum rgb(48,129,126)
62 right amygdaloid complex rgb(98,153,112)
63 left amygdaloid complex rgb(98,153,112)
64 diencephalon rgb(69,110,53)
65 thalamus rgb(166,113,137)
66 right thalamus rgb(122,101,38)
67 left thalamus rgb(122,101,38)
68 pineal gland rgb(253,135,192)
69 midbrain rgb(145,92,109)
70 substantia nigra rgb(46,101,131)
71 right substantia nigra rgb(0,108,112)
72 left substantia nigra rgb(0,108,112)
73 cerebral white matter rgb(250,250,225)
74 right superior longitudinal fasciculus rgb(127,150,88)
75 left superior longitudinal fasciculus rgb(127,150,88)
76 right inferior longitudinal fasciculus rgb(159,116,163)
77 left inferior longitudinal fasciculus rgb(159,116,163)
78 right arcuate fasciculus rgb(125,102,154)
79 left arcuate fasciculus rgb(125,102,154)
80 right uncinate fasciculus rgb(106,174,155)
81 left uncinate fasciculus rgb(106,174,155)
82 right cingulum bundle rgb(154,146,83)
83 left cingulum bundle rgb(154,146,83)
84 projection fibers rgb(126,126,55)
85 right corticospinal tract rgb(201,160,133)
86 left corticospinal tract rgb(201,160,133)
87 right optic radiation rgb(78,152,141)
88 left optic radiation rgb(78,152,141)
89 right medial lemniscus rgb(174,140,103)
90 left medial lemniscus rgb(174,140,103)
91 right superior cerebellar peduncle rgb(139,126,177)
92 left superior cerebellar peduncle rgb(139,126,177)
93 right middle cerebellar peduncle rgb(148,120,72)
94 left middle cerebellar peduncle rgb(148,120,72)
95 right inferior cerebellar peduncle rgb(186,135,135)
96 left inferior cerebellar peduncle rgb(186,135,135)
97 optic chiasm rgb(99,106,24)
98 right optic tract rgb(156,171,108)
99 left optic tract rgb(156,171,108)
100 right fornix rgb(64,123,147)
101 left fornix rgb(64,123,147)
102 commissural fibers rgb(138,95,74)
103 corpus callosum rgb(97,113,158)
104 posterior commissure rgb(126,161,197)
105 cerebellar white matter rgb(194,195,164)
106 CSF space rgb(85,188,255)
107 ventricles of brain rgb(88,106,215)
108 right lateral ventricle rgb(88,106,215)
109 left lateral ventricle rgb(88,106,215)
110 right third ventricle rgb(88,106,215)
111 left third ventricle rgb(88,106,215)
112 cerebral aqueduct rgb(88,106,215)
113 fourth ventricle rgb(88,106,215)
114 subarachnoid space rgb(88,106,215)
115 spinal cord rgb(244,214,49)
116 gray matter of spinal cord rgb(200,200,215)
117 white matter of spinal cord rgb(250,250,225)
118 endocrine system of brain rgb(82,174,128)
119 pituitary gland rgb(57,157,110)
120 adenohypophysis rgb(60,143,83)
121 neurohypophysis rgb(92,162,109)
122 meninges rgb(255,244,209)
123 dura mater rgb(255,244,209)
124 arachnoid rgb(255,244,209)
125 pia mater rgb(255,244,209)
126 muscles of head rgb(201,121,77)
127 salivary glands rgb(70,163,117)
128 lips rgb(188,91,95)
129 nose rgb(177,122,101)
130 tongue rgb(166,84,94)
131 soft palate rgb(182,105,107)
132 right inner ear rgb(229,147,118)
133 left inner ear rgb(229,147,118)
134 right external ear rgb(174,122,90)
135 left external ear rgb(174,122,90)
136 right middle ear rgb(201,112,73)
137 left middle ear rgb(201,112,73)
138 right eyeball rgb(194,142,0)
139 left eyeball rgb(194,142,0)
140 skull rgb(241,213,144)
141 right frontal bone rgb(203,179,77)
142 left frontal bone rgb(203,179,77)
143 right parietal bone rgb(229,204,109)
144 left parietal bone rgb(229,204,109)
145 right temporal bone rgb(255,243,152)
146 left temporal bone rgb(255,243,152)
147 right sphenoid bone rgb(209,185,85)
148 left sphenoid bone rgb(209,185,85)
149 right ethmoid bone rgb(248,223,131)
150 left ethmoid bone rgb(248,223,131)
151 occipital bone rgb(255,230,138)
152 maxilla rgb(196,172,68)
153 right zygomatic bone rgb(255,255,167)
154 right lacrimal bone rgb(255,250,160)
155 vomer bone rgb(255,237,145)
156 right palatine bone rgb(242,217,123)
157 left palatine bone rgb(242,217,123)
158 mandible rgb(222,198,101)
159 neck rgb(177,122,101)
160 muscles of neck rgb(213,124,109)
161 pharynx rgb(184,105,108)
162 larynx rgb(150,208,243)
163 thyroid gland rgb(62,162,114)
164 right parathyroid glands rgb(62,162,114)
165 left parathyroid glands rgb(62,162,114)
166 skeleton of neck rgb(242,206,142)
167 hyoid bone rgb(250,210,139)
168 cervical vertebral column rgb(255,255,207)
169 thorax rgb(177,122,101)
170 trachea rgb(182,228,255)
171 bronchi rgb(175,216,244)
172 right lung rgb(197,165,145)
173 left lung rgb(197,165,145)
174 superior lobe of right lung rgb(172,138,115)
175 superior lobe of left lung rgb(172,138,115)
176 middle lobe of right lung rgb(202,164,140)
177 inferior lobe of right lung rgb(224,186,162)
178 inferior lobe of left lung rgb(224,186,162)
179 pleura rgb(255,245,217)
180 heart rgb(206,110,84)
181 right atrium rgb(210,115,89)
182 left atrium rgb(203,108,81)
183 atrial septum rgb(233,138,112)
184 ventricular septum rgb(195,100,73)
185 right ventricle of heart rgb(181,85,57)
186 left ventricle of heart rgb(152,55,13)
187 mitral valve rgb(159,63,27)
188 tricuspid valve rgb(166,70,38)
189 aortic valve rgb(218,123,97)
190 pulmonary valve rgb(225,130,104)
191 aorta rgb(224,97,76)
192 pericardium rgb(255,244,209)
193 pericardial cavity rgb(184,122,154)
194 esophagus rgb(211,171,143)
195 thymus rgb(47,150,103)
196 mediastinum rgb(255,244,209)
197 skin of thoracic wall rgb(173,121,88)
198 muscles of thoracic wall rgb(188,95,76)
199 skeleton of thorax rgb(255,239,172)
200 thoracic vertebral column rgb(226,202,134)
201 ribs rgb(253,232,158)
202 sternum rgb(244,217,154)
203 right clavicle rgb(205,179,108)
204 left clavicle rgb(205,179,108)
205 abdominal cavity rgb(186,124,161)
206 abdomen rgb(177,122,101)
207 peritoneum rgb(255,255,220)
208 omentum rgb(234,234,194)
209 peritoneal cavity rgb(204,142,178)
210 retroperitoneal space rgb(180,119,153)
211 stomach rgb(216,132,105)
212 duodenum rgb(255,253,229)
213 small bowel rgb(205,167,142)
214 colon rgb(204,168,143)
215 anus rgb(255,224,199)
216 liver rgb(221,130,101)
217 biliary tree rgb(0,145,30)
218 gallbladder rgb(139,150,98)
219 pancreas rgb(249,180,111)
220 spleen rgb(157,108,162)
221 urinary system rgb(203,136,116)
222 right kidney rgb(185,102,83)
223 left kidney rgb(185,102,83)
224 right ureter rgb(247,182,164)
225 left ureter rgb(247,182,164)
226 urinary bladder rgb(222,154,132)
227 urethra rgb(124,186,223)
228 right adrenal gland rgb(249,186,150)
229 left adrenal gland rgb(249,186,150)
230 female internal genitalia rgb(244,170,147)
231 uterus rgb(255,181,158)
232 right fallopian tube rgb(255,190,165)
233 left fallopian tube rgb(227,153,130)
234 right ovary rgb(213,141,113)
235 left ovary rgb(213,141,113)
236 vagina rgb(193,123,103)
237 male internal genitalia rgb(216,146,127)
238 prostate rgb(230,158,140)
239 right seminal vesicle rgb(245,172,147)
240 left seminal vesicle rgb(245,172,147)
241 right deferent duct rgb(241,172,151)
242 left deferent duct rgb(241,172,151)
243 skin of abdominal wall rgb(177,124,92)
244 muscles of abdominal wall rgb(171,85,68)
245 skeleton of abdomen rgb(217,198,131)
246 lumbar vertebral column rgb(212,188,102)
247 female external genitalia rgb(185,135,134)
248 male external genitalia rgb(185,135,134)
249 skeleton of upper limb rgb(198,175,125)
250 muscles of upper limb rgb(194,98,79)
251 right upper limb rgb(177,122,101)
252 left upper limb rgb(177,122,101)
253 right shoulder rgb(177,122,101)
254 left shoulder rgb(177,122,101)
255 right arm rgb(177,122,101)
256 left arm rgb(177,122,101)
257 right elbow rgb(177,122,101)
258 left elbow rgb(177,122,101)
259 right forearm rgb(177,122,101)
260 left forearm rgb(177,122,101)
261 right wrist rgb(177,122,101)
262 left wrist rgb(177,122,101)
263 right hand rgb(177,122,101)
264 left hand rgb(177,122,101)
265 skeleton of lower limb rgb(255,238,170)
266 muscles of lower limb rgb(206,111,93)
267 right lower limb rgb(177,122,101)
268 left lower limb rgb(177,122,101)
269 right hip rgb(177,122,101)
270 left hip rgb(177,122,101)
271 right thigh rgb(177,122,101)
272 left thigh rgb(177,122,101)
273 right knee rgb(177,122,101)
274 left knee rgb(177,122,101)
275 right leg rgb(177,122,101)
276 left leg rgb(177,122,101)
277 right foot rgb(177,122,101)
278 left foot rgb(177,122,101)
279 peripheral nervous system rgb(216,186,0)
280 autonomic nerve rgb(255,226,77)
281 sympathetic trunk rgb(255,243,106)
282 cranial nerves rgb(255,234,92)
283 vagus nerve rgb(240,210,35)
284 peripheral nerve rgb(224,194,0)
285 circulatory system rgb(213,99,79)
286 systemic arterial system rgb(217,102,81)
287 systemic venous system rgb(0,147,202)
288 pulmonary arterial system rgb(0,122,171)
289 pulmonary venous system rgb(186,77,64)
290 lymphatic system rgb(111,197,131)
291 needle rgb(240,255,30)
292 region 0 rgb(185,232,61)
293 region 1 rgb(0,226,255)
294 region 2 rgb(251,159,255)
295 region 3 rgb(230,169,29)
296 region 4 rgb(0,194,113)
297 region 5 rgb(104,160,249)
298 region 6 rgb(221,108,158)
299 region 7 rgb(137,142,0)
300 region 8 rgb(230,70,0)
301 region 9 rgb(0,147,0)
302 region 10 rgb(0,147,248)
303 region 11 rgb(231,0,206)
304 region 12 rgb(129,78,0)
305 region 13 rgb(0,116,0)
306 region 14 rgb(0,0,255)
307 region 15 rgb(157,0,0)
308 unknown rgb(100,100,130)
309 cyst rgb(205,205,100)

Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in CIALab).

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