Events:VT-NAMIC-NCBC-Collaboration-meeting-2009

Logistics

• Confirmed date: Friday, October 9, 2009, 9am-4pm (time is tentative, but room has been reserved, confirmed with Katie MAstrogiacomo)
• Location: 1249 Boylston Street, 2nd floor conference room

Goals

• To be completed or partially completed prior to the meeting by Andriy Fedorov and Ginger Li (Oct 7-8):
  • Provide necessary user- and developer-level Slicer training for Ginger
  • Understand the currently used processing workflow
  • Confirm reproducibility of the processing steps between VT and SPL
  • Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results (wiki page)
• To be completed during the meeting
  • Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy)
  • Review the available data and current segmentation results
  • Discuss action timeline for the remaining part of the funded project period
  • Discuss publication plans

Agenda

• Review, discuss and finalize the processing workflow (to be discussed and documented by Andriy Fedorov and Ginger Li prior to the meeting Oct 7-8)
  • atlas construction
  • image pre-processing
  • registration
  • segmentation
• Review currents results
• Identify Slicer components of the workflow that are ... working, broken, missing

Attendance

Open to all interested parties:

1. Chris Wyatt
2. Ginger Li
3. Ron Kikinis
4. Sandy Wells
5. Andriy Fedorov

References

TODO: link these

• notes on the current workflow
• registration results
• newly available Slicer modules (registration, mask detection, bias correction)
• atlas construction paper by Styner's group