Difference between revisions of "2008 Winter Project Week:Dorsolateral Prefrontal Cortex Segmentation"

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(New page: {| |thumb|320px|Return to [[2008_Winter_Project_Week ]] |} __NOTOC__ ===Key Investigators=== * BWH: Marek Kubicki, Sylvain Buix, Katharina Quintus * MIT: Polina Go...)
 
 
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__NOTOC__
 
__NOTOC__
 
===Key Investigators===
 
===Key Investigators===
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* BWH: Marek Kubicki, Sylvain Buix, Katharina Quintus
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* BWH: Marek Kubicki, Sylvain Bouix, Katharina Quintus
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* GTech: John Melanakos
 
* MIT: Polina Gollard
 
* MIT: Polina Gollard
 
* Kitware: Steve Pieper, Brad Davis
 
* Kitware: Steve Pieper, Brad Davis
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<h1>Objective</h1>
 
<h1>Objective</h1>
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Our objective is to make progress on the roadmap initiative of creating an end to end solution that provides a tutorial for NA-MIC kit users to perform lesion analyses in Slicer3.
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The goal of this project is to make progress in creating slicer3 tool for segmenting and performing volumetric, as well as cortical thickness analysis of DLPFC.  
  
 
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<h1>Approach, Plan </h1>
 
<h1>Approach, Plan </h1>
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Fully analyze 3 lupus subjects and 3 matched healthy normal volunteer data-sets collected.
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We plan to:
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1. Finalize EM segmentation optimization for newly acquired structural 3T data,
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2. Integrate bias field correction into the segmentation tool,
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3. Run the segmentation on 1.5T and 3T NAMIC datasets, and compare results
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4. Start incorporating geometric boundary module into slicer3
  
 
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<h1>Progress</h1>
 
<h1>Progress</h1>
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====June 2007 Project Week====
 
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First meeting as a new DBP in lupus.
 
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We received hands on training on ITK/VTK, as well as, EM Segment.
 
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We processed lupus case using EM Segment.
 
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====Jan 2007 Project Half Week====
 
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Jeremy attended this meeting in order to learn about NA-MIC
 
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<br style="clear: both;" />
 
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===References===
 
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*
 

Latest revision as of 01:13, 19 December 2007

Home < 2008 Winter Project Week:Dorsolateral Prefrontal Cortex Segmentation
Return to 2008_Winter_Project_Week


Key Investigators

  • BWH: Marek Kubicki, Sylvain Bouix, Katharina Quintus
  • GTech: John Melanakos
  • MIT: Polina Gollard
  • Kitware: Steve Pieper, Brad Davis

Objective

The goal of this project is to make progress in creating slicer3 tool for segmenting and performing volumetric, as well as cortical thickness analysis of DLPFC.

Approach, Plan

We plan to: 1. Finalize EM segmentation optimization for newly acquired structural 3T data, 2. Integrate bias field correction into the segmentation tool, 3. Run the segmentation on 1.5T and 3T NAMIC datasets, and compare results 4. Start incorporating geometric boundary module into slicer3

Progress

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