https://www.na-mic.org/w/index.php?title=2008_Winter_Project_Week_Template&feed=atom&action=history
2008 Winter Project Week Template - Revision history
2024-03-29T05:59:21Z
Revision history for this page on the wiki
MediaWiki 1.33.0
https://www.na-mic.org/w/index.php?title=2008_Winter_Project_Week_Template&diff=18083&oldid=prev
Kikinis at 15:50, 27 November 2007
2007-11-27T15:50:06Z
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|valign="top"|[[Image:Case24-coronal-tensors-edit.png |thumb|<del class="diffchange diffchange-inline">250px</del>|<del class="diffchange diffchange-inline">Detailed View of the </del>Cingulum Bundle Anchor Tract]]</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|valign="top"|[[Image:Case24-coronal-tensors-edit.png |thumb|<ins class="diffchange diffchange-inline">320px</ins>|<ins class="diffchange diffchange-inline">The </ins>Cingulum Bundle Anchor Tract]]</div></td></tr>
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Kikinis
https://www.na-mic.org/w/index.php?title=2008_Winter_Project_Week_Template&diff=18082&oldid=prev
Kikinis at 15:49, 27 November 2007
2007-11-27T15:49:07Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:49, 27 November 2007</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{|</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{|</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|valign="top"|[[Image:<del class="diffchange diffchange-inline">ZoomedResultWithModel</del>.png|thumb|250px|<del class="diffchange diffchange-inline">3D Volumetric Segmentation</del>]]</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|valign="top"|[[Image:<ins class="diffchange diffchange-inline">Case24-coronal-tensors-edit</ins>.png |thumb|250px|<ins class="diffchange diffchange-inline">Detailed View of the Cingulum Bundle Anchor Tract</ins>]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td></tr>
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Kikinis
https://www.na-mic.org/w/index.php?title=2008_Winter_Project_Week_Template&diff=18051&oldid=prev
Tkapur at 22:58, 26 November 2007
2007-11-26T22:58:40Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:58, 26 November 2007</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|<del class="diffchange diffchange-inline">[[Image:genuFAp.jpg|thumb|320px|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.]]</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|<ins class="diffchange diffchange-inline">valign="top"</ins>|[[Image:<ins class="diffchange diffchange-inline">ZoomedResultWithModel</ins>.<ins class="diffchange diffchange-inline">png</ins>|thumb|<ins class="diffchange diffchange-inline">250px</ins>|<ins class="diffchange diffchange-inline">3D Volumetric Segmentation</ins>]]</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:<del class="diffchange diffchange-inline">genuFA</del>.<del class="diffchange diffchange-inline">jpg</del>|thumb|<del class="diffchange diffchange-inline">320px</del>|<del class="diffchange diffchange-inline">Regression of FA data; solid line represents the mean and dotted lines the standard deviation.</del>]]</div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__NOTOC__</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__NOTOC__</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===Key Investigators===</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===Key Investigators===</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">UNC</del>: <del class="diffchange diffchange-inline">Isabelle Corouge</del>, <del class="diffchange diffchange-inline">Casey Goodlett, Guido Gerig</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">Georgia Tech</ins>: <ins class="diffchange diffchange-inline">John Melonakos</ins>, <ins class="diffchange diffchange-inline">Vandana Mohan</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">Utah</del>: <del class="diffchange diffchange-inline">Tom Fletcher</del>, <del class="diffchange diffchange-inline">Ross Whitaker</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Kitware: Luis Ibanez</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">BWH</ins>: <ins class="diffchange diffchange-inline">Mark Niethammer</ins>, <ins class="diffchange diffchange-inline">Marek Kubicki</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><div style="margin: 20px;"></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><div style="margin: 20px;"></div></td></tr>
<tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l18" >Line 18:</td>
<td colspan="2" class="diff-lineno">Line 15:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h1>Objective</h1></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h1>Objective</h1></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>We <del class="diffchange diffchange-inline">are developing methods </del>for <del class="diffchange diffchange-inline">analyzing diffusion tensor </del>data <del class="diffchange diffchange-inline">along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>We <ins class="diffchange diffchange-inline">have developed techniques </ins>for <ins class="diffchange diffchange-inline">finding the optimal geodesic path (or anchor tract) between two regions of interest in DWMRI </ins>data.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">The objectives of this project are to port the Fast Sweeping and optimal geodesic path tractography code to ITK as well as the code to provide for volumetric segmentation of DW-MRI data.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">See our [[Algorithm:GATech:Finsler_Active_Contour_DWI| Project Page]] for more details.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></div></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></div></div></td></tr>
<tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l25" >Line 25:</td>
<td colspan="2" class="diff-lineno">Line 25:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><div style="width: 27%; float: left; padding-right: 3%;"></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><div style="width: 27%; float: left; padding-right: 3%;"></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><h1>Approach, Plan</h1></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><h1>Approach, Plan </h1></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Our approach is <ins class="diffchange diffchange-inline">described by </ins>the <ins class="diffchange diffchange-inline">references </ins>below. <ins class="diffchange diffchange-inline">Our </ins>challenge <ins class="diffchange diffchange-inline">is to build the ITK infrastructure (such as new ITK iterators) </ins>to <ins class="diffchange diffchange-inline">support </ins>this <ins class="diffchange diffchange-inline">algorithm</ins>. <ins class="diffchange diffchange-inline"> </ins>Our <ins class="diffchange diffchange-inline">main purpose at </ins>the <ins class="diffchange diffchange-inline">Project Week </ins>is to <ins class="diffchange diffchange-inline">collaborate on new algorithms and clinical data to provide the best solutions for our DBP partners</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Our approach <del class="diffchange diffchange-inline">for analyzing diffusion tensors </del>is <del class="diffchange diffchange-inline">summarized in </del>the <del class="diffchange diffchange-inline">IPMI 2007 reference </del>below. <del class="diffchange diffchange-inline">The main </del>challenge to this <del class="diffchange diffchange-inline">approach is <foo></del>.</div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Our <del class="diffchange diffchange-inline">plan for </del>the <del class="diffchange diffchange-inline">project week </del>is to <del class="diffchange diffchange-inline">first try out <bar>,..</del>.</div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></div></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
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<td colspan="2" class="diff-lineno">Line 33:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h1>Progress</h1></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h1>Progress</h1></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Software </del>for <del class="diffchange diffchange-inline">the </del>fiber <del class="diffchange diffchange-inline">tracking </del>and <del class="diffchange diffchange-inline">statistical analysis along </del>the <del class="diffchange diffchange-inline">tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part </del>of the <del class="diffchange diffchange-inline">[[NA</del>-<del class="diffchange diffchange-inline">MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project</del>. <del class="diffchange diffchange-inline">The methods </del>have <del class="diffchange diffchange-inline">been validated on </del>a <del class="diffchange diffchange-inline">repeated scan of a healthy individual. This work has been published as a conference paper </del>(<del class="diffchange diffchange-inline">MICCAI 2005) and a journal version (MEDIA 2006</del>). <del class="diffchange diffchange-inline">Our recent IPMI </del>2007 <del class="diffchange diffchange-inline">paper includes a nonparametric regression method for analyzing data along a fiber tract</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">====June 2007 Project Week====</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">During this Project Week, we did a lot of algorithmic design work, focusing on leveraging optimal or geodesic path information to provide </ins>for <ins class="diffchange diffchange-inline">volumetric segmentations of </ins>fiber <ins class="diffchange diffchange-inline">bundles. Working with Marek Kubicki </ins>and the <ins class="diffchange diffchange-inline">Harvard DBP, we were able to begin the process </ins>of <ins class="diffchange diffchange-inline">applying our algorithm to </ins>the <ins class="diffchange diffchange-inline">full cingulum bundle with new labelmaps and to a new fiber bundle </ins>- <ins class="diffchange diffchange-inline">Arcuate</ins>. <ins class="diffchange diffchange-inline"> We </ins>have <ins class="diffchange diffchange-inline">recently achieved significant results in volumetric segmentations using </ins>a <ins class="diffchange diffchange-inline">locally-constrained region-based technique </ins>(<ins class="diffchange diffchange-inline">see the images above</ins>).</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">====Jan </ins>2007 <ins class="diffchange diffchange-inline">Project Half Week====</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">We finished the itkDirectionalIterator which will be needed in the Fast Sweeping implementation. Furthermore, we made progress in porting our Matlab code to ITK</ins>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></div></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div></div></div></td></tr>
<tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l46" >Line 46:</td>
<td colspan="2" class="diff-lineno">Line 47:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===References===</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===References===</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">Fletcher</del>, <del class="diffchange diffchange-inline">P</del>.<del class="diffchange diffchange-inline">T</del>., <del class="diffchange diffchange-inline">Tao, R</del>., <del class="diffchange diffchange-inline">Jeong, W.-K</del>., <del class="diffchange diffchange-inline">Whitaker, R</del>.<del class="diffchange diffchange-inline">T</del>.<del class="diffchange diffchange-inline">, "A Volumetric Approach to Quantifying </del>Region-<del class="diffchange diffchange-inline">to</del>-<del class="diffchange diffchange-inline">Region White Matter Connectivity in Diffusion Tensor </del>MRI<del class="diffchange diffchange-inline">," </del>to <del class="diffchange diffchange-inline">appear Information Processing in Medical Imaging (IPMI) </del>2007.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">J. Melonakos</ins>, <ins class="diffchange diffchange-inline">M</ins>. <ins class="diffchange diffchange-inline">Niethammer, V</ins>. <ins class="diffchange diffchange-inline">Mohan</ins>, <ins class="diffchange diffchange-inline">M</ins>. <ins class="diffchange diffchange-inline">Kubicki</ins>, <ins class="diffchange diffchange-inline">J</ins>. <ins class="diffchange diffchange-inline">Miller</ins>, <ins class="diffchange diffchange-inline">A</ins>. <ins class="diffchange diffchange-inline">Tannenbaum</ins>. <ins class="diffchange diffchange-inline">Locally-Constrained </ins>Region-<ins class="diffchange diffchange-inline">Based Methods for DW</ins>-MRI <ins class="diffchange diffchange-inline">Segmentation. Submitted </ins>to <ins class="diffchange diffchange-inline">MMBIA </ins>2007.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">Corouge</del>, <del class="diffchange diffchange-inline">I</del>., <del class="diffchange diffchange-inline">Fletcher</del>, <del class="diffchange diffchange-inline">P</del>.<del class="diffchange diffchange-inline">T</del>., <del class="diffchange diffchange-inline">Joshi</del>, <del class="diffchange diffchange-inline">S</del>., <del class="diffchange diffchange-inline">Gilmore</del>, <del class="diffchange diffchange-inline">J.H</del>., and <del class="diffchange diffchange-inline">Gerig, G</del>.<del class="diffchange diffchange-inline">, "Fiber Tract-Oriented Statistics </del>for <del class="diffchange diffchange-inline">Quantitative Diffusion Tensor MRI </del>Analysis<del class="diffchange diffchange-inline">," Medical Image Analysis 10 (2006), 786--798</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">V. Mohan</ins>, <ins class="diffchange diffchange-inline">J</ins>. <ins class="diffchange diffchange-inline">Melonakos</ins>, <ins class="diffchange diffchange-inline">M. Niethammer, M. Kubicki</ins>, <ins class="diffchange diffchange-inline">and A. Tannenbaum. Finsler Level Set Segmentation for Imagery in Oriented Domains</ins>. <ins class="diffchange diffchange-inline">BMVC 2007</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">Corouge, I</del>., <del class="diffchange diffchange-inline">Fletcher, P.T</del>.<del class="diffchange diffchange-inline">, Joshi</del>, S., <del class="diffchange diffchange-inline">Gilmore J</del>.<del class="diffchange diffchange-inline">H</del>.<del class="diffchange diffchange-inline">, and Gerig, G</del>.<del class="diffchange diffchange-inline">, Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI </del>Analysis, <del class="diffchange diffchange-inline">Lecture Notes </del>in <del class="diffchange diffchange-inline">Computer Science LNCS, James S</del>. <del class="diffchange diffchange-inline">Duncan </del>and <del class="diffchange diffchange-inline">Guido Gerig</del>, <del class="diffchange diffchange-inline">editors</del>, <del class="diffchange diffchange-inline">Springer Verlag</del>, <del class="diffchange diffchange-inline">Vol. 3749</del>, <del class="diffchange diffchange-inline">Oct. </del>2005<del class="diffchange diffchange-inline">, pp</del>. <del class="diffchange diffchange-inline">131 -- 138</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* J. Melonakos</ins>, <ins class="diffchange diffchange-inline">V. Mohan</ins>, <ins class="diffchange diffchange-inline">M</ins>. <ins class="diffchange diffchange-inline">Niethammer</ins>, <ins class="diffchange diffchange-inline">K. Smith</ins>, <ins class="diffchange diffchange-inline">M</ins>. <ins class="diffchange diffchange-inline">Kubicki</ins>, and <ins class="diffchange diffchange-inline">A. Tannenbaum</ins>. <ins class="diffchange diffchange-inline">Finsler Tractography </ins>for <ins class="diffchange diffchange-inline">White Matter Connectivity </ins>Analysis <ins class="diffchange diffchange-inline">of the Cingulum Bundle. MICCAI 2007</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">C</del>. <del class="diffchange diffchange-inline">Goodlett</del>, <del class="diffchange diffchange-inline">I. Corouge</del>, <del class="diffchange diffchange-inline">M</del>. <del class="diffchange diffchange-inline">Jomier, and G</del>. <del class="diffchange diffchange-inline">Gerig, </del>A <del class="diffchange diffchange-inline">Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol</del>. <del class="diffchange diffchange-inline">ISC/NAMIC/ </del>MICCAI <del class="diffchange diffchange-inline">Workshop on Open</del>-<del class="diffchange diffchange-inline">Source Software</del>, 2005<del class="diffchange diffchange-inline">, Online publication: http://hdl.handle.net/1926/39 </del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">J</ins>. <ins class="diffchange diffchange-inline">Melonakos</ins>, <ins class="diffchange diffchange-inline">E</ins>. <ins class="diffchange diffchange-inline">Pichon</ins>, S. <ins class="diffchange diffchange-inline">Angenet</ins>, <ins class="diffchange diffchange-inline">and A</ins>. <ins class="diffchange diffchange-inline">Tannenbaum</ins>. <ins class="diffchange diffchange-inline">Finsler Active Contours</ins>. <ins class="diffchange diffchange-inline">IEEE Transactions on Pattern </ins>Analysis <ins class="diffchange diffchange-inline">and Machine Intelligence</ins>, <ins class="diffchange diffchange-inline">to appear </ins>in <ins class="diffchange diffchange-inline">2007.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* E</ins>. <ins class="diffchange diffchange-inline">Pichon </ins>and <ins class="diffchange diffchange-inline">A. Tannenbaum. Curve segmentation using directional information</ins>, <ins class="diffchange diffchange-inline">relation to pattern detection. In IEEE International Conference on Image Processing (ICIP)</ins>, <ins class="diffchange diffchange-inline">volume 2</ins>, <ins class="diffchange diffchange-inline">pages 794-797</ins>, 2005.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">E</ins>. <ins class="diffchange diffchange-inline">Pichon</ins>, <ins class="diffchange diffchange-inline">C-F Westin</ins>, <ins class="diffchange diffchange-inline">and A</ins>. <ins class="diffchange diffchange-inline">Tannenbaum</ins>. A <ins class="diffchange diffchange-inline">Hamilton-Jacobi-Bellman approach to high angular resolution diffusion tractography</ins>. <ins class="diffchange diffchange-inline">In International Conference on Medical Image Computing and Computer Assisted Intervention (</ins>MICCAI<ins class="diffchange diffchange-inline">), pages 180</ins>-<ins class="diffchange diffchange-inline">187</ins>, 2005.</div></td></tr>
</table>
Tkapur
https://www.na-mic.org/w/index.php?title=2008_Winter_Project_Week_Template&diff=18049&oldid=prev
Tkapur at 22:38, 26 November 2007
2007-11-26T22:38:27Z
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:genuFAp.jpg|thumb|320px|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[Image:genuFAp.jpg|thumb|320px|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.]]</div></td></tr>
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Tkapur
https://www.na-mic.org/w/index.php?title=2008_Winter_Project_Week_Template&diff=18047&oldid=prev
Tkapur: New page: {| |Return to [[2008_Winter_Project_Week ]] |[[Image:genuFAp.jpg|thumb|320px|Scatter plot of the original FA data through the genu of the corpus callosu...
2007-11-26T22:31:20Z
<p>New page: {| |<a href="/wiki/File:NAMIC-SLC.tif" title="File:NAMIC-SLC.tif">thumb|320px|Return to [[2008_Winter_Project_Week</a> ]] |[[Image:genuFAp.jpg|thumb|320px|Scatter plot of the original FA data through the genu of the corpus callosu...</p>
<p><b>New page</b></p><div>{|<br />
|[[Image:NAMIC-SLC.tif|thumb|320px|Return to [[2008_Winter_Project_Week]] ]]<br />
|[[Image:genuFAp.jpg|thumb|320px|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.]]<br />
|[[Image:genuFA.jpg|thumb|320px|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.]]<br />
|}<br />
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__NOTOC__<br />
===Key Investigators===<br />
* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig<br />
* Utah: Tom Fletcher, Ross Whitaker<br />
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<h1>Objective</h1><br />
We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.<br />
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<h1>Approach, Plan</h1><br />
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Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>.<br />
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Our plan for the project week is to first try out <bar>,...<br />
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<h1>Progress</h1><br />
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Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.<br />
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===References===<br />
* Fletcher, P.T., Tao, R., Jeong, W.-K., Whitaker, R.T., "A Volumetric Approach to Quantifying Region-to-Region White Matter Connectivity in Diffusion Tensor MRI," to appear Information Processing in Medical Imaging (IPMI) 2007.<br />
* Corouge, I., Fletcher, P.T., Joshi, S., Gilmore, J.H., and Gerig, G., "Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis," Medical Image Analysis 10 (2006), 786--798.<br />
* Corouge, I., Fletcher, P.T., Joshi, S., Gilmore J.H., and Gerig, G., Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 131 -- 138<br />
* C. Goodlett, I. Corouge, M. Jomier, and G. Gerig, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .</div>
Tkapur