Difference between revisions of "2009 Summer Project Week DWI / DTI QC and Prepare Tool: DTIPrep"
From NAMIC Wiki
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* Both a GUI and command line tool | * Both a GUI and command line tool | ||
| − | * "Study-specific Protocol" based | + | * "Study-specific Protocol" based |
| − | ** Handles NRRD and MINC2 formats | + | ** Handles NRRD and MINC2 formats |
| − | ** Image | + | ** Image/diffusion information check |
** Padding/Cropping of data | ** Padding/Cropping of data | ||
| − | ** | + | ** Slice-wise, interlace-wise and gradient-wise intensity and motion check |
** Motion/Eddy current correction | ** Motion/Eddy current correction | ||
** DTI data, as well as FA/MD | ** DTI data, as well as FA/MD | ||
Revision as of 05:12, 11 June 2009
Home < 2009 Summer Project Week DWI < DTI QC and Prepare Tool: DTIPrep
Key Investigators
- UNC: Zhexing Liu, Heather Cody Hazlett, Martin Styner
- Utah: Casey Goodlett, Guido Gerig, Tom Fletcher, Ran Tao
Objective
We are developing a GUI/command line tool for DWI QC and DTI preparing.
- Both a GUI and command line tool
- "Study-specific Protocol" based
- Handles NRRD and MINC2 formats
- Image/diffusion information check
- Padding/Cropping of data
- Slice-wise, interlace-wise and gradient-wise intensity and motion check
- Motion/Eddy current correction
- DTI data, as well as FA/MD
Approach, Plan
The tool will allow a "protocol" based execution via parameter files. The parameter files contain all the settings/preferences/options and this file can be created using the tool's GUI. This tool will handle the conversion of DICOM data to volumetric image formats (NRRD), perform automated quality control, correct data if possible, possibly reject parts of the data and provide a reporting facility.
Progress
