2009 Winter Project Week Gofigure LevelSet

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Key Investigators

  • kishore mosanliganti, Harvard Medical School
  • Arnaud Gelas, Harvard Medical School
  • Alexandre Gouaillard, Harvard Medical School


  • Implement references 1, 2, 3 in ITK
  • Write corresponding IJ paper
  • submit to IJ

Approach, Plan

  • Filters are already implemented
  • Code Review with an ITK expert (luis/bill/jim?)
  • Run on cell datasets
  • Write IJ paper
  • Submit



  1. Kishore Mosaliganti, Lee Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang and Joel Saltz. Reconstruction of Cellular Biological Structures from Optical Microscopy Data. In IEEE Transactions in Visualization and Computer Graphics, 14 (4), pp. 863-876, July/August 2008.
  2. Tensor Classification of N-point Correlation Function features for Histology Tissue Segmentation. K. Mosaliganti, F. Janoos, O. Irfanoglu, R. Ridgway, R. Machiraju, K. Huang, J. Saltz, G. Leone and M. Ostrowski. Special Issue on Medical Image Analysis with Applications in Biology, Journal of Medical Image Analysis, 2008.
  3. Gang Li, Tianming Liu, Ashley Tarokh, Jingxin Nie, Lei Guo, Andrew Mara, Scott Holley and Stephen TC Wong. 3D cell nuclei segmentation based on gradient flow tracking. BMC Cell Biology, 8:40, 2007.