Difference between revisions of "2009 Winter Project Week Tractography Segmentation"
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Our approach models bundles as multinomial distributions over voxels and orientations. Under a hierarchical Bayesian model, Dirichlet process is used as a prior distribution to learn the number of clusters. Gibbs sampling is used for inference. | Our approach models bundles as multinomial distributions over voxels and orientations. Under a hierarchical Bayesian model, Dirichlet process is used as a prior distribution to learn the number of clusters. Gibbs sampling is used for inference. | ||
| − | Our plan is to integrate this approach into 3D-slicer, use 3D-slicer to do experimental evaluation (including registering multiple subjects, generating fibers and clustering fibers), and compare with approach proposed by O'Donnell, whose use the spectral clustering and the mean of closest distances. | + | Our plan is to integrate this approach into 3D-slicer, use 3D-slicer to do experimental evaluation (including registering multiple subjects, generating fibers and clustering fibers), and compare with approach proposed by O'Donnell and Westin, whose use the spectral clustering and the mean of closest distances. |
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Revision as of 00:06, 3 January 2009
Home < 2009 Winter Project Week Tractography Segmentation[Image:NAMIC-SLC.jpg|thumb|320px|Return to Project Week Main Page ]] |}
Key Investigators
- Xiaogang Wang, MIT
- Carl-Fredrik Westin, BWH
Objective
We are developing a nonparametric Bayesian approach to cluster white matter fiber tracts to bundles. These bundles correspond to white matter anatomy. This approach is used to cluster fibers across multiple subjects and compare their anatomical structures. The number of clusters is learnt from data instead of being manually specified.
Approach
Our approach models bundles as multinomial distributions over voxels and orientations. Under a hierarchical Bayesian model, Dirichlet process is used as a prior distribution to learn the number of clusters. Gibbs sampling is used for inference.
Our plan is to integrate this approach into 3D-slicer, use 3D-slicer to do experimental evaluation (including registering multiple subjects, generating fibers and clustering fibers), and compare with approach proposed by O'Donnell and Westin, whose use the spectral clustering and the mean of closest distances.
Progress
We have the code of this approach written in C++ and matlab. In this project week, we need to figure out how to integrate our code into 3D-slicer, how to use 3D-slicer to run registration, tractography and O' Donnell's approach.
References
- [1] G. Kindlmann, D. B. Ennis, R. T. Whitaker and C-F Westin. "Diffusion tensor analysis with invariant gradients and rotation tangents. IEEE TMI, Vol. 26, No. 11, pp. 1483-1499, 2007.
- [2] P. Savadjiev, S. W. Zucker and K. Siddiqi. On the Differential Geometry of 3D Flow Patterns: Generalized Helicoids and Diffusion MRI Analysis. Proc. ICCV 2007.
