2011 Summer Project Week Customizing EMSegmenter pipelines for brain lesions

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Customizing EMSegmenter pipelines for brain lesions

Key Investigators

• University of Pennsylvania: Dominique Belhachemi
• University of Pennsylvania: Kilian Pohl
• Brigham and Women's Hospital: Alex Zaitsev

Objective

The goal is to segment white matter lesions based on T1 and FLAIR brain scans.

Approach, Plan

We want to use the EMSegmenter modle for this project. The plan is to create a two channel pipeline which includes pre-processing (e.g. registration) and applying the EM algorithm to perform the segmentation.

Progress

References

http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks

Delivery Mechanism

This work will be delivered to the NAMIC Kit as a

1. Slicer Module
   1. Built-in:
   2. Extension -- commandline:
   3. Extension -- loadable: