Difference between revisions of "2011 Summer Project Week Integrate BRAINSCut into Slicer3"

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Image:PW-MIT2011.png|[[2011_Summer_Project_Week#Projects|Projects List]]
 
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File:BRAINSCutFigure.png|BRAINSCut Result Example
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File:BRAINSCutFigure.png|BRAINSCut Result Example After Rendering with Slicer Model Maker
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File:ProbabilityMaps.png|BRAINSCut Probability Map Example for Sub-cortical regions of brain to identify ROI
 
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#Powell, S., Magnotta, V., Johnson, H., and . . . , V. J., “Registration and machine learning-based automated segmentation of subcortical and cerebellar brain . . . ,” NeuroImage (Jan 2008)
 
#Powell, S., Magnotta, V., Johnson, H., and . . . , V. J., “Registration and machine learning-based automated segmentation of subcortical and cerebellar brain . . . ,” NeuroImage (Jan 2008)
 
#Eun Young Kim, Hans Johnson, "Multi-structure segmentation of multi-modal brain images using artificial neural networks", SPIE Proceedings Paper(Mar 2010)
 
#Eun Young Kim, Hans Johnson, "Multi-structure segmentation of multi-modal brain images using artificial neural networks", SPIE Proceedings Paper(Mar 2010)
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==Download Page==
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http://www.nitrc.org/projects/brainscut
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==Delivery Mechanism==
 
==Delivery Mechanism==
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<!-- List here how you plan to deliver your results to user communities -->
 
  
 
This work will be delivered to the NAMIC Kit as a  
 
This work will be delivered to the NAMIC Kit as a  

Revision as of 15:16, 23 June 2011

Home < 2011 Summer Project Week Integrate BRAINSCut into Slicer3

  • BRAINSCut Result Example After Rendering with Slicer Model Maker

  • BRAINSCut Probability Map Example for Sub-cortical regions of brain to identify ROI

Integrate BRAINSCut into Slicer3

Key Investigators

  • University of Iowa: Eunyoung(Regina) Kim


Objective

  1. Integration of BRAINSCut into Slicer3/Slicer4
    Integration of GMI feature images into BRAINSCut
    Test BRAINSCut

Approach, Plan

  1. Check dependencies of BRAINSCut
    and integrate into Slicer CLM.

Progress


References

  1. Powell, S., Magnotta, V., Johnson, H., and . . . , V. J., “Registration and machine learning-based automated segmentation of subcortical and cerebellar brain . . . ,” NeuroImage (Jan 2008)
  2. Eun Young Kim, Hans Johnson, "Multi-structure segmentation of multi-modal brain images using artificial neural networks", SPIE Proceedings Paper(Mar 2010)

Download Page

http://www.nitrc.org/projects/brainscut

Delivery Mechanism

This work will be delivered to the NAMIC Kit as a

  1. NITRIC distribution
  2. Slicer Module
    1. Built-in:
    2. Extension -- commandline:
    3. Extension -- loadable:
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