2011 Summer Project Week Integrate BRAINSCut into Slicer3

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  Projects List

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  BRAINSCut: Result Example After Rendering with Slicer Model Maker

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  BRAINSCut: Probability Map Example for Sub-cortical regions of brain to identify ROI

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  BRAINSCut: One of Feature Images.

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  BRAINSCut: Caudate test statistics between BRAINSCut output and Manual Traces

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  BRAINSCut: Putamen test statistics between BRAINSCut output and Manual Trace

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  BRAINSCut: Thalamus test statistics between BRAINSCut output and Manual Trace

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  BRAINSCut: Hippocampus test statistics between BRAINSCut output and Manual Trace

Integrate BRAINSCut into Slicer3

Key Investigators

• University of Iowa: Eunyoung(Regina) Kim

Objective

1. Integration of BRAINSCut into Slicer3/Slicer4

   Integration of GMI feature images into BRAINSCut

   Test BRAINSCut

Approach, Plan

1. Check dependencies of BRAINSCut

   and integrate into Slicer CLM.

Progress

References

1. Powell, S., Magnotta, V., Johnson, H., and . . . , V. J., “Registration and machine learning-based automated segmentation of subcortical and cerebellar brain . . . ,” NeuroImage (Jan 2008)
2. Eun Young Kim, Hans Johnson, "Multi-structure segmentation of multi-modal brain images using artificial neural networks", SPIE Proceedings Paper(Mar 2010)

Download Page

http://www.nitrc.org/projects/brainscut

Delivery Mechanism

This work will be delivered to the NAMIC Kit as a

1. NITRIC distribution
2. Slicer Module
   1. Built-in:
   2. Extension -- commandline:
   3. Extension -- loadable: