Difference between revisions of "2011 Summer Project Week Integrate BRAINSCut into Slicer3"

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<h3>Progress</h3>
 
<h3>Progress</h3>
  
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# BRAINSCut Incorporating with Slicer3
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# Generating BRAINSCut model for subcortical structures: caudate, putamen, thalamus, and hippocampus.
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# Verifying generated model by comparing manual traces.
  
  
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#Powell, S., Magnotta, V., Johnson, H., and . . . , V. J., “Registration and machine learning-based automated segmentation of subcortical and cerebellar brain . . . ,” NeuroImage (Jan 2008)
 
#Powell, S., Magnotta, V., Johnson, H., and . . . , V. J., “Registration and machine learning-based automated segmentation of subcortical and cerebellar brain . . . ,” NeuroImage (Jan 2008)
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#Eun Young Kim, Hans Johnson, "Multi-structure segmentation of multi-modal brain images using artificial neural networks", SPIE Proceedings Paper(Mar 2010)
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#Eun Young Kim, Hans Johnson, "Multi-structure segmentation of multi-modal brain images using artificial neural networks", SPIE Proceedings Paper (Mar 2010)
  
 
==Download Page==
 
==Download Page==

Revision as of 18:00, 23 June 2011

Home < 2011 Summer Project Week Integrate BRAINSCut into Slicer3

  • BRAINSCut: Result Example After Rendering with Slicer Model Maker

  • BRAINSCut: Probability Map Example for Sub-cortical regions of brain to identify ROI

  • BRAINSCut: One of Feature Images.

  • BRAINSCut: Caudate test statistics between BRAINSCut output and Manual Traces

  • BRAINSCut: Putamen test statistics between BRAINSCut output and Manual Trace

  • BRAINSCut: Thalamus test statistics between BRAINSCut output and Manual Trace

  • BRAINSCut: Hippocampus test statistics between BRAINSCut output and Manual Trace

Integrate BRAINSCut into Slicer3

Key Investigators

  • University of Iowa: Eunyoung(Regina) Kim


Objective

  1. Integration of BRAINSCut into Slicer3/Slicer4
    Integration of GMI feature images into BRAINSCut
    Test BRAINSCut

Approach, Plan

  1. Check dependencies of BRAINSCut
    and integrate into Slicer CLM.

Progress

  1. BRAINSCut Incorporating with Slicer3
  2. Generating BRAINSCut model for subcortical structures: caudate, putamen, thalamus, and hippocampus.
  3. Verifying generated model by comparing manual traces.


References

  1. Powell, S., Magnotta, V., Johnson, H., and . . . , V. J., “Registration and machine learning-based automated segmentation of subcortical and cerebellar brain . . . ,” NeuroImage (Jan 2008)
  2. Eun Young Kim, Hans Johnson, "Multi-structure segmentation of multi-modal brain images using artificial neural networks", SPIE Proceedings Paper (Mar 2010)

Download Page

http://www.nitrc.org/projects/brainscut

Delivery Mechanism

This work will be delivered to the NAMIC Kit as a

  1. NITRIC distribution
  2. Slicer Module
    1. Built-in:
    2. Extension -- commandline:
    3. Extension -- loadable:
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