Difference between revisions of "2011 Summer Project Week Plastimatch for EMSegmenter"

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<!-- Fill this out before Friday's summary presentations - list what you did and how well it worked. -->
 
<!-- Fill this out before Friday's summary presentations - list what you did and how well it worked. -->
We added plastimatch to the EMSegmenter GUI and integrated some base code to call plastimatch.
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We added plastimatch to the EMSegmenter GUI and integrated some base code to call plastimatch.<br>
Fixed compiler issue on i386 for stand-alone plastimatch and Slicer's plastimatch extension.
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Fixed compiler issue on i386 for stand-alone plastimatch and Slicer's plastimatch extension.<br>
Now we have a nighly plastimatch-slicer extension for Linux 32 bit.
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Now we have a nighly plastimatch-slicer extension for Linux 32 bit.<br>
 
<br>
 
<br>
 
Open: We have to add an option to plastimatch_slicer_xformwarp to set the target grid. <br>
 
Open: We have to add an option to plastimatch_slicer_xformwarp to set the target grid. <br>

Revision as of 19:45, 23 June 2011

Home < 2011 Summer Project Week Plastimatch for EMSegmenter

Full Title of Project

Key Investigators

  • University of Pennsylvania: Dominique Belhachemi
  • University of Pennsylvania: Kilian Pohl
  • University of Pennsylvania: Daniel Haehn
  • MGH: Greg Sharp


Objective

During the EMSegmenter's pre-processing we have to register our internal atlas to the subject scan. Currently we support two registration tools:
1. BRAINSFit
2. CMTK

We would like to add "plastimatch" to this list.


Approach, Plan

Investigating the commandline interface of plastimatch.
Find the right parameter for our use cases.


Progress

We added plastimatch to the EMSegmenter GUI and integrated some base code to call plastimatch.
Fixed compiler issue on i386 for stand-alone plastimatch and Slicer's plastimatch extension.
Now we have a nighly plastimatch-slicer extension for Linux 32 bit.

Open: We have to add an option to plastimatch_slicer_xformwarp to set the target grid.
Open: Find the right parameter for our CT use cases.

References

http://plastimatch.org/
http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks

Delivery Mechanism

This work will be delivered to the NAMIC Kit as part of the EMSegmenter module.