Difference between revisions of "2012 Project Week:BatchProcessing"

From NAMIC Wiki
Jump to: navigation, search
Line 39: Line 39:
 
==Delivery Mechanism==
 
==Delivery Mechanism==
  
Possibly nipype as an extension.
+
* Possibly nipype as an extension.
 
+
** Need to resolve dependencies
 +
** Optionally require users to install independent version of scipy
  
 
==Notes==
 
==Notes==

Revision as of 15:59, 7 January 2012

Home < 2012 Project Week:BatchProcessing

Key Investigators

  • MIT: Satra Ghosh
  • Iowa: Hans Johnson
  • Kitware: Jean-Christophe Fillion-Robin
  • BWH: Andrey Fedorov
  • Isomics: Steve Pieper

Various DBP projects and other users have requested the ability to automate large tasks and interoperate with other image analysis tools. Nipype is a solution that is proving useful in this domain so we would like to further refine it as an option to the na-mic community.

Objective

Batch processing with Slicer and Nipype

Approach, Plan

  • Work on HD use cases to improve batch processing framework
  • Develop example workflows as templates for other projects
  • Identify and if possible fix any issues that prevent smooth integration of slicer modules into batch workflows.

Progress


Delivery Mechanism

  • Possibly nipype as an extension.
    • Need to resolve dependencies
    • Optionally require users to install independent version of scipy

Notes