Difference between revisions of "2012 Winter Project Week:EndoSeg"

From NAMIC Wiki
Jump to: navigation, search
m (Created page with '__NOTOC__ <gallery> Image:PW-SLC2011.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…')
 
Line 2: Line 2:
 
<gallery>
 
<gallery>
 
Image:PW-SLC2011.png|[[2011_Winter_Project_Week#Projects|Projects List]]
 
Image:PW-SLC2011.png|[[2011_Winter_Project_Week#Projects|Projects List]]
−
Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
 
−
Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
 
 
</gallery>
 
</gallery>
−
 
−
==Instructions for Use of this Template==
 
−
#Please create a new wiki page with an appropriate title for your project using the convention Project/<Project Name>
 
−
#Copy the entire text of this page into the page created above
 
−
#Link the created page into the list of projects for the project event
 
−
#Delete this section from the created page
 
−
#Send an email to tkapur at bwh.harvard.edu if you are stuck
 
  
 
==Key Investigators==
 
==Key Investigators==
−
* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
+
Yi Gao, Liang-Jia Zhu, Josh Cates, Gregory Phillip Gardner, Rob MacLeod, Sylvain Bouix, Allen Tannenbaum
−
* Utah: Tom Fletcher, Ross Whitaker
 
  
 
<div style="margin: 20px;">
 
<div style="margin: 20px;">
Line 21: Line 11:
  
 
<h3>Objective</h3>
 
<h3>Objective</h3>
−
We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
+
We are developing methods for segmenting the endocardium from the DE-MRI.
−
 
 
−
 
 
−
 
 
−
 
 
  
  
Line 34: Line 20:
 
<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
  
−
Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below.  The main challenge to this approach is <foo>.
+
Approach to be filled here.
−
 
 
−
Our plan for the project week is to first try out <bar>,...
 
  
 
</div>
 
</div>
Line 43: Line 27:
  
 
<h3>Progress</h3>
 
<h3>Progress</h3>
−
Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
+
The current segmentation module is in the Slicer extension manager.
−
 
 
  
 
</div>
 
</div>
Line 55: Line 38:
 
This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
 
This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
  
−
#ITK Module
 
 
#Slicer Module
 
#Slicer Module
−
##Built-in
 
 
##Extension -- commandline
 
##Extension -- commandline
−
##Extension -- loadable
 
−
#Other (Please specify)
 
  
 
==References==
 
==References==
−
*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
 
−
* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
 
−
* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
 
−
* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .
 
  
 
</div>
 
</div>

Revision as of 16:07, 9 November 2011

Home < 2012 Winter Project Week:EndoSeg

Key Investigators

Yi Gao, Liang-Jia Zhu, Josh Cates, Gregory Phillip Gardner, Rob MacLeod, Sylvain Bouix, Allen Tannenbaum

Objective

We are developing methods for segmenting the endocardium from the DE-MRI.


Approach, Plan

Approach to be filled here.

Progress

The current segmentation module is in the Slicer extension manager.

Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

  1. Slicer Module
    1. Extension -- commandline

References

Retrieved from "https://www.na-mic.org/w/index.php?title=2012_Winter_Project_Week:EndoSeg&oldid=71824"