Difference between revisions of "2012 Winter Project Week:PairWiseDTIRegistration"

From NAMIC Wiki
Jump to: navigation, search
Line 27: Line 27:
  
 
DTI-Reg is an open-source C++ application that performs pair-wise DTI registration.
 
DTI-Reg is an open-source C++ application that performs pair-wise DTI registration.
Individual steps of the pair-wise registration pipeline are performed via external applications. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit or BRAINSDemonWarp, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via resampleDTI.
+
Individual steps of the pair-wise registration pipeline are performed via external applications, called via BatchMake. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit or BRAINSDemonWarp, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via resampleDTI.
  
 
</div>
 
</div>

Revision as of 20:11, 10 November 2011

Home < 2012 Winter Project Week:PairWiseDTIRegistration

DTI registration/processing pipeline in Slicer3

Key Investigators

  • UNC: Clement Vachet, Martin Styner
  • IOWA: Mark Scully, Hans Johnson

Objective

We focus on enabling the use of advanced DTI processing within NA-MIC and on automatizing steps to perform atlas-based DTI population analysis. One component is pair-wise DTI registration which can be directly performed by DTI-Reg, a C++ application developed in that regard.


Approach, Plan

DTI-Reg is an open-source C++ application that performs pair-wise DTI registration. Individual steps of the pair-wise registration pipeline are performed via external applications, called via BatchMake. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit or BRAINSDemonWarp, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via resampleDTI.

Progress


Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a Slicer extension