Difference between revisions of "2013 Summer Project Week:Enhance and update SPL atlas"

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Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
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Image:GrayMatter_bad.png|Gray Matter Prior
 
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'''TODO: add images'''
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==Key Investigators==
 
==Key Investigators==
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
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'''TODO: link to SINAPSE wiki page'''
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# Register latest SPL atlas to AC-PC aligned space
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# Resample label image to 0.75mm resolution
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# Create new tissue prior probability images from 1457 subjects in HD dataset
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# Clean and fix prior images (cerebellum WM vs. cerebral WM, etc.)
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# Register and resample prior images to 0.75mm
 +
# Create basal ganglia region
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# Reconcile overlapping prior maps to normalized probability
  
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
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'''TODO'''
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Completed:
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# Register latest SPL atlas to AC-PC aligned space
 +
# Resample label image to 0.75mm resolution
 +
# Create new tissue prior probability images from 1457 subjects in HD dataset
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In progress:
 +
# Clean and fix prior images (cerebellum WM vs. cerebral WM, etc.)
  
  
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==References==
 
==References==
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'''TODO: link to SPL atlas'''
 

Latest revision as of 14:05, 21 June 2013

Home < 2013 Summer Project Week:Enhance and update SPL atlas


Key Investigators

  • UIowa: Hans Johnson, Dave Welch

Objective

Add spatial and tissue class priors, AC-PC alignment, all images and labels at same resolution (0.75 mm isotropic)

Approach, Plan

  1. Register latest SPL atlas to AC-PC aligned space
  2. Resample label image to 0.75mm resolution
  3. Create new tissue prior probability images from 1457 subjects in HD dataset
  4. Clean and fix prior images (cerebellum WM vs. cerebral WM, etc.)
  5. Register and resample prior images to 0.75mm
  6. Create basal ganglia region
  7. Reconcile overlapping prior maps to normalized probability

Progress

Completed:

  1. Register latest SPL atlas to AC-PC aligned space
  2. Resample label image to 0.75mm resolution
  3. Create new tissue prior probability images from 1457 subjects in HD dataset

In progress:

  1. Clean and fix prior images (cerebellum WM vs. cerebral WM, etc.)


Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

  1. ITK Module
  2. Slicer Module
    1. Built-in
    2. Extension -- commandline
    3. Extension -- loadable
  3. Other (Please specify) YES, atlas and label files

References

Retrieved from "https://www.na-mic.org/w/index.php?title=2013_Summer_Project_Week:Enhance_and_update_SPL_atlas&oldid=82709"