Difference between revisions of "2013 Summer Project Week:Enhance and update SPL atlas"
From NAMIC Wiki
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<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | ' | + | # Register latest SPL atlas to AC-PC aligned space |
| + | # Resample label image to 0.75mm resolution | ||
| + | # Create new tissue prior probability images from 1457 subjects in HD dataset | ||
| + | # Clean and fix prior images (cerebellum WM vs. cerebral WM, etc.) | ||
| + | # Register and resample prior images to 0.75mm | ||
| + | # Create basal ganglia region | ||
| + | # Reconcile overlapping prior maps to normalized probability | ||
| + | |||
| + | We've done some work on this and hope to complete the project this week: | ||
| + | https://www.icts.uiowa.edu/confluence/x/rQJJB | ||
</div> | </div> | ||
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==References== | ==References== | ||
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Revision as of 17:18, 17 June 2013
Home < 2013 Summer Project Week:Enhance and update SPL atlas
TODO: add images
Key Investigators
- UIowa: Hans Johnson, Dave Welch
Objective
Add spatial and tissue class priors, AC-PC alignment, all images and labels at same resolution (0.75 mm isotropic)
Approach, Plan
- Register latest SPL atlas to AC-PC aligned space
- Resample label image to 0.75mm resolution
- Create new tissue prior probability images from 1457 subjects in HD dataset
- Clean and fix prior images (cerebellum WM vs. cerebral WM, etc.)
- Register and resample prior images to 0.75mm
- Create basal ganglia region
- Reconcile overlapping prior maps to normalized probability
We've done some work on this and hope to complete the project this week: https://www.icts.uiowa.edu/confluence/x/rQJJB
Progress
TODO
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
- ITK Module
- Slicer Module
- Built-in
- Extension -- commandline
- Extension -- loadable
- Other (Please specify) YES, atlas and label files
