Difference between revisions of "2014 Project Week:TBISegmentation"

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<h3>Objective</h3>
 
<h3>Objective</h3>
 
* Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
 
* Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
* Study and gain understanding of the manual process for segmenting TBI
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* Study and gain understanding of the manual process for segmenting TBI.
 
* Test the algorithm with users from USC.  
 
* Test the algorithm with users from USC.  
  
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== Reference ==
 
== Reference ==
* [http://www.nitrc.org/projects/parser_4d 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)]
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* [http://www.nitrc.org/projects/parser_4d 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration) Code Repo]
 
* [http://www.cs.utah.edu/~bowang/projects/active4D/4D_Active_Cut.html 4D Active Cut]
 
* [http://www.cs.utah.edu/~bowang/projects/active4D/4D_Active_Cut.html 4D Active Cut]
 
* [http://link.springer.com/chapter/10.1007/978-3-319-02126-3_4 Modeling 4D changes in TBI]
 
* [http://link.springer.com/chapter/10.1007/978-3-319-02126-3_4 Modeling 4D changes in TBI]

Revision as of 14:29, 6 January 2014

Home < 2014 Project Week:TBISegmentation

Key Investigators

  • GE: Marcel Prastawa
  • Utah: Bo Wang, Guido Gerig
  • USC: Andrei Irimia, Jack Van Horn


Project Description

Objective

  • Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
  • Study and gain understanding of the manual process for segmenting TBI.
  • Test the algorithm with users from USC.

Approach, Plan

  • Wrap existing code into a Slicer extension.
  • Determine approaches for user interaction for semi-automatic segmentation.
  • Test and evaluate Slicer modules for TBI processing:
    • Intra and inter time points coregistration.
    • Initial atlas alignment using affine transformation.
    • Skull stripping to obtain initial brain mask.

Progress

Reference