Difference between revisions of "2014 Project Week:TBISegmentation"

From NAMIC Wiki
Jump to: navigation, search
Line 23: Line 23:
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
* Wrap existing code into a Slicer extension
+
* Wrap existing code into a Slicer extension.
* Determine approaches for user interaction for semi-automatic segmentation segmentation.  
+
* Determine approaches for user interaction for semi-automatic segmentation.  
 
* Test and evaluate Slicer modules for TBI processing:
 
* Test and evaluate Slicer modules for TBI processing:
** Intra and inter time points coregistration
+
** Intra and inter time points coregistration.
** Initial atlas alignment using affine transformation
+
** Initial atlas alignment using affine transformation.
** Skull stripping to obtain initial brain mask  
+
** Skull stripping to obtain initial brain mask.
 
</div>
 
</div>
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
Line 38: Line 38:
 
== Reference ==
 
== Reference ==
 
* [http://www.nitrc.org/projects/parser_4d 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)]
 
* [http://www.nitrc.org/projects/parser_4d 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)]
 +
* [http://www.cs.utah.edu/~bowang/projects/active4D/4D_Active_Cut.html 4D Active Cut]
 +
* [http://link.springer.com/chapter/10.1007/978-3-319-02126-3_4 Modeling 4D changes in TBI]

Revision as of 14:28, 6 January 2014

Home < 2014 Project Week:TBISegmentation

Key Investigators

  • GE: Marcel Prastawa
  • Utah: Bo Wang, Guido Gerig
  • USC: Andrei Irimia, Jack Van Horn


Project Description

Objective

  • Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
  • Study and gain understanding of the manual process for segmenting TBI
  • Test the algorithm with users from USC.

Approach, Plan

  • Wrap existing code into a Slicer extension.
  • Determine approaches for user interaction for semi-automatic segmentation.
  • Test and evaluate Slicer modules for TBI processing:
    • Intra and inter time points coregistration.
    • Initial atlas alignment using affine transformation.
    • Skull stripping to obtain initial brain mask.

Progress

Reference