2014 Project Week:TBISegmentation

• 

  Projects List

• 

  Interactive process

Key Investigators

• GE: Marcel Prastawa
• Utah: Bo Wang, Guido Gerig
• USC: Andrei Irimia, Jack Van Horn

Project Description

Objective

• Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
• Study and gain understanding of the manual process for segmenting TBI.
• Test the algorithm with users from USC.

Approach, Plan

• Wrap existing code into a Slicer extension.
• Determine approaches for user interaction for semi-automatic segmentation.
• Test and evaluate Slicer modules for TBI processing:
  • Intra and inter time points coregistration.
  • Initial atlas alignment using affine transformation.
  • Skull stripping to obtain initial brain mask.

Progress

Reference

• 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration) Code Repo
• 4D Active Cut
• Modeling 4D changes in TBI