Difference between revisions of "2014 Project Week:TCIA Browser Extension in Slicer"

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<gallery>
 
Image:PW-SLC2014.png|[[2014_Winter_Project_Week#Projects|Projects List]]
 
Image:PW-SLC2014.png|[[2014_Winter_Project_Week#Projects|Projects List]]
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Image:Tcia1.png|Layout: Patients, Studies, Series
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Image:Tcia2.png|Collections
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Image:Tcia3.png|Series View
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* BWH: Alireza Mehrtash, Andrey Fedorov, Ron Kikinis
 
* BWH: Alireza Mehrtash, Andrey Fedorov, Ron Kikinis
 
* Isomics: Steve Pieper
 
* Isomics: Steve Pieper
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* NCI Imaging Program: Justin Kirby, John Freymann
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==Project Description==
 
==Project Description==
 
The Cancer Imaging Archive (TCIA) hosts a large collection of Cancer medical imaging data which is available to public [1]. The goal of this project is to develop a Slicer module in order to retrieve the medical images hosted at TCIA and visualize them in 3D Slicer.  
 
The Cancer Imaging Archive (TCIA) hosts a large collection of Cancer medical imaging data which is available to public [1]. The goal of this project is to develop a Slicer module in order to retrieve the medical images hosted at TCIA and visualize them in 3D Slicer.  
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<h3>Objective</h3>
 
<h3>Objective</h3>
* Study the latest changes in TCIA API and update the current module prototype.
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* Create a scripted Slicer module for browsing TCIA collections and loading images into Slicer scene.
*
 
 
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</div>
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
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* Study the latest changes in TCIA API [3] and update the current module prototype.
 
* Discuss about the module functionality and UI design.
 
* Discuss about the module functionality and UI design.
 
* Review the desired interactions of module with Slicer DICOM database.
 
* Review the desired interactions of module with Slicer DICOM database.
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<div style="width: 27%; float: left; padding-right: 3%;">
 
<h3>Progress</h3>
 
<h3>Progress</h3>
*  
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* We developed a scripted module for Slicer which can be used to connect to TCIA archive, browse the data, download and load into Slicer scene.
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* The module is finalized and is ready to be published as a Slicer extension.
 
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</div>
 
</div>
 
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==References==
 
==References==
* TCIA Home Page : http://cancerimagingarchive.net/
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*[1] Module Code at Github: https://github.com/mehrtash/TCIABrowser/tree/master/TCIABrowser
* Slicer TCIA interface project at QIICR wiki: https://github.com/QIICR/ProjectIssuesAndWiki/wiki/Slicer-tcia-interface
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*[2] TCIA Home Page : http://cancerimagingarchive.net/
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*[3] QIICR wiki: Slicer TCIA interface project : https://github.com/QIICR/ProjectIssuesAndWiki/wiki/Slicer-tcia-interface
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*[4] TCIA Rest API Documentation: https://wiki.cancerimagingarchive.net/display/Public/TCIA+Programmatic+Interface+%28REST+API%29+Usage+Guide
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*[5] Module UI Design: https://docs.google.com/presentation/d/1HJcbNxhAGXP9Raw0JZFPzKXqgOgR8sv7eikYIsWPKNQ/edit?usp=sharing

Latest revision as of 17:08, 10 January 2014

Home < 2014 Project Week:TCIA Browser Extension in Slicer

Key Investigators

  • BWH: Alireza Mehrtash, Andrey Fedorov, Ron Kikinis
  • Isomics: Steve Pieper
  • NCI Imaging Program: Justin Kirby, John Freymann

Project Description

The Cancer Imaging Archive (TCIA) hosts a large collection of Cancer medical imaging data which is available to public [1]. The goal of this project is to develop a Slicer module in order to retrieve the medical images hosted at TCIA and visualize them in 3D Slicer.

Objective

  • Create a scripted Slicer module for browsing TCIA collections and loading images into Slicer scene.

Approach, Plan

  • Study the latest changes in TCIA API [3] and update the current module prototype.
  • Discuss about the module functionality and UI design.
  • Review the desired interactions of module with Slicer DICOM database.
  • Review the different methods for displaying and organizing query results.

Progress

  • We developed a scripted module for Slicer which can be used to connect to TCIA archive, browse the data, download and load into Slicer scene.
  • The module is finalized and is ready to be published as a Slicer extension.

References