Difference between revisions of "2015 Winter Project Week COPD Breakout"
From NAMIC Wiki
(Created page with '== Introduction== === Project Goals and Funding === === History === === Brief intro to COPD === === Team === == Architecture == == Chest Imaging Platform == === Compone…') |
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| − | == Chest Imaging Platform == | + | == Chest Imaging Platform (CIP) == |
| + | [https://github.com/acil-bwh/ChestImagingPlatform.git Git Repository] | ||
| + | === Code Structure === | ||
| + | CIP has four main components | ||
| + | *Common: base library | ||
| + | *Utilities: third party libraries | ||
| + | *Command Line Tools: Slicer execution model tools | ||
| + | *cip_python: python library | ||
| + | |||
| + | === Building CIP === | ||
| + | git clone https://github.com/acil-bwh/ChestImagingPlatform.git | ||
| + | mkdir ChestImagingPlatform-build | ||
| + | cd ChestImagingPlatoform-build | ||
| + | ccmake ../ChestImagingPlatform | ||
=== Components and Data type === | === Components and Data type === | ||
| − | + | * [https://github.com/acil-bwh/ChestImagingPlatform/blob/release/Common/cipChestConventions.h CIP conventions] | |
| + | |||
| + | * Region/Type structure for labelmaps | ||
| + | |||
=== Python and CIP === | === Python and CIP === | ||
| + | [https://github.com/acil-bwh/ChestImagingPlatform/tree/release/cip_python cip_python] provides the following functionality: | ||
| + | * Code base for scale-space particles [https://github.com/acil-bwh/ChestImagingPlatform/tree/release/cip_python/particles] | ||
| + | * Phenotype computation framework [https://github.com/acil-bwh/ChestImagingPlatform/tree/release/cip_python/phentoypes] | ||
| + | * Nipype interfaces for CLIS [https://github.com/acil-bwh/ChestImagingPlatform/tree/release/cip_python/nipype] | ||
| − | |||
* Command Line Tools | * Command Line Tools | ||
Revision as of 09:26, 6 January 2015
Home < 2015 Winter Project Week COPD BreakoutContents
Introduction
Project Goals and Funding
History
Brief intro to COPD
Team
Architecture
Chest Imaging Platform (CIP)
Code Structure
CIP has four main components
- Common: base library
- Utilities: third party libraries
- Command Line Tools: Slicer execution model tools
- cip_python: python library
Building CIP
git clone https://github.com/acil-bwh/ChestImagingPlatform.git mkdir ChestImagingPlatform-build cd ChestImagingPlatoform-build ccmake ../ChestImagingPlatform
Components and Data type
- Region/Type structure for labelmaps
Python and CIP
cip_python provides the following functionality:
- Code base for scale-space particles [1]
- Phenotype computation framework [2]
- Nipype interfaces for CLIS [3]
- Command Line Tools
Testing Infrastructure
=== CDash ===
