Difference between revisions of "2016 Summer Project Week/Segmentations Integration"

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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
 
* Move classes into Slicer core
 
* Move classes into Slicer core
* Consider integrating vtkOrientedImageData to VTK core
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** Convert to Slicer core coding conventions (curly brackets in line with the contained block)
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** vtkSegmentationCore -> vtkAddon'''?'''
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** Segmentations/MRML -> Libs/MRML/Core
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** Segmentations/MRMLDM -> Libs/MRML/DisplayableManager
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** Segmentations/Widgets -> MRML/Widgets'''?'''
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** Segmentations/EditorEffects -> '''?'''
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** Segmentations -> Modules/Loadable
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** SegmentEditor -> Modules/Scripted
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* Discuss possible integration vtkOrientedImageData to VTK core
 
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Revision as of 14:23, 7 June 2016

Home < 2016 Summer Project Week < Segmentations Integration

Key Investigators

  • Csaba Pinter
  • Andras Lasso
  • Steve Pieper

Project Description

Objective

  • Integration of the Segmentation infrastructure into Slicer core
  • The infrastructure contains the following components:
    • SegmentationCore: Pure VTK implementation of the segmentation object, oriented VTK image data and utilities, and the automated conversion mechanism
    • Segmentation MRML: Segmentation MRML node, display node, storage node, displayable managers
    • Segmentations module: Slicer module for handling segmentation nodes, various re-usable widgets, and subject hierarchy plugins
    • Segment Editor: Slicer module for editing segmentation nodes directly. Similar to Editor, but has a C++ core, and extended functionality that makes use of the advanced Segmentations features
    • Segment Morphology: Slicer module for performing expand/shrink and logical operations (union, intersection, subtraction) on segments. Its logic can be used in Segment Editor effects
    • Segment Registration (?): Distance map based registration of segmentations (from SlicerProstate::DistanceMapBasedRegistration, integration TBD)
  • Presentation slides explaining the motivation, features, and details of the infrastructure

Approach, Plan

  • Move classes into Slicer core
    • Convert to Slicer core coding conventions (curly brackets in line with the contained block)
    • vtkSegmentationCore -> vtkAddon?
    • Segmentations/MRML -> Libs/MRML/Core
    • Segmentations/MRMLDM -> Libs/MRML/DisplayableManager
    • Segmentations/Widgets -> MRML/Widgets?
    • Segmentations/EditorEffects -> ?
    • Segmentations -> Modules/Loadable
    • SegmentEditor -> Modules/Scripted
  • Discuss possible integration vtkOrientedImageData to VTK core

Progress