Difference between revisions of "2016 Winter Project Week/Projects/3DNrrdSequences"

From NAMIC Wiki
Jump to: navigation, search
(Created page with "__NOTOC__ <gallery> Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|Projects List <!-- Use the "Upload file" link on the left...")
 
 
(2 intermediate revisions by the same user not shown)
Line 10: Line 10:
  
 
==Project Description==
 
==Project Description==
Although the sequences extension has support for 3D+t dataset viewing, it does not support loading of 3D+t data from Nrrd exported by PLUS.
+
Although the Sequences extension has support for 3D+t dataset viewing, it does not support loading of 3D+t data from Nrrd exported by PLUS.
  
 
==Project Description==
 
==Project Description==
Line 27: Line 27:
 
|
 
|
 
<!-- Progress and Next steps bullet points (fill out at the end of project week -->
 
<!-- Progress and Next steps bullet points (fill out at the end of project week -->
*
+
* Minor fixes in PLUS to correct output
 +
* https://www.assembla.com/spaces/plus/tickets/1055-fix-nrrd-output-so-that-it-is-loadable-in-slicer/details
 
|}
 
|}
  
 
==Background and References==
 
==Background and References==
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
* Header of a sample 3D+t NRRD exported by PLUS
+
* Partial header of a sample 3D+t NRRD exported by PLUS
 
  NRRD0004
 
  NRRD0004
 
  <nowiki>#</nowiki> Complete NRRD file format specification at:
 
  <nowiki>#</nowiki> Complete NRRD file format specification at:

Latest revision as of 22:34, 5 January 2016

Home < 2016 Winter Project Week < Projects < 3DNrrdSequences

Key Investigators

  • Adam Rankin

Project Description

Although the Sequences extension has support for 3D+t dataset viewing, it does not support loading of 3D+t data from Nrrd exported by PLUS.

Project Description

Objective Approach and Plan Progress and Next Steps
  • To enable loading of 3D NRRD files in the Sequences extension
  • Debug IO classes related to NRRD loading
  • Identify failure point and correct

Background and References

  • Partial header of a sample 3D+t NRRD exported by PLUS
NRRD0004
# Complete NRRD file format specification at:
# http://teem.sourceforge.net/nrrd/format.html
# File generated by PLUS version 2.3.0
dimension: 4
encoding: raw
kinds: domain domain domain              time
sizes: 112 112 48          170
space: right-anterior-superior-time
space directions: (1,0,0,0) (0,1,0,0) (0,0,1,0) (0,0,0,1)
space origin: (0,0,0,0)
type: uint8
ultrasound image orientation:=MFA
ultrasound image type:=BRIGHTNESS