Difference between revisions of "2016 Winter Project Week/Projects/BRAINSFit in MeVisLab"

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<gallery>
 
<gallery>
 
Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]]
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Image:CLI_BrainsFIT_in_MeVisLab.png|Screenshot of CLI_BrainsFIT module panel in MeVisLab
 
</gallery>
 
</gallery>
  
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* Hans Meine
 
* Hans Meine
 
* Steve Pieper
 
* Steve Pieper
 +
* Adam Rankin (observer)
  
 
==Project Description==
 
==Project Description==
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<div style="margin: 20px;">
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{| class="wikitable"
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<div style="width: 27%; float: left; padding-right: 3%;">
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! style="text-align: left; width:27%" |  Objective
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<h3>Objective</h3>
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! style="text-align: left; width:27%" |  Approach and Plan
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! style="text-align: left; width:27%" |  Progress and Next Steps
 +
|- style="vertical-align:top;"
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|
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<!-- Objective bullet points -->
 
* Perform interoperability tests with "interesting" CLI modules in MeVisLab
 
* Perform interoperability tests with "interesting" CLI modules in MeVisLab
 
* Leverage Siemens' Syngo.Frontier platform for integrating CLI modules
 
* Leverage Siemens' Syngo.Frontier platform for integrating CLI modules
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</div>
+
|
−
<div style="width: 27%; float: left; padding-right: 3%;">
 
−
<h3>Approach, Plan</h3>
 
 
* Potentially interesting CLIs discussed so far:
 
* Potentially interesting CLIs discussed so far:
 
** BrainsFIT
 
** BrainsFIT
 
** CIP (Chest Imaging Platform)
 
** CIP (Chest Imaging Platform)
 
** UKFTractography
 
** UKFTractography
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* Identify and address potential blockers for using these CLIs in MeVisLab/Frontier
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* Identify and address potential blockers for using these CLIs in MeVisLab/[http://www.healthcare.siemens.de/computed-tomography/clinical-imaging-solutions/syngo-via-frontier Frontier]
 
* Design a small demo GUI / visualization
 
* Design a small demo GUI / visualization
−
</div>
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* Also check interoperability with fiducial support (cf. Nicole's [[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | recent coordinate system fixes]])
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<div style="width: 27%; float: left; padding-right: 3%;">
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|
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<h3>Progress</h3>
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* pointfile support added to [https://github.com/commontk/ctk-cli ctk-cli]
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</div>
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* ctk-cli properly moved to MeVisLab's ThirdParty repository
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</div>
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* [https://github.com/commontk/CTK/issues/622 Issue filed] about pointfile addition to spec / XSD
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<h3>Related Links</h3>
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* got simple network with CIP's CLI modules running in MeVisLab
 +
** no fatal issues
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** only one seed point can be passed to lesion segmentation
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|}
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 +
==Background and References==
 
* Demo of CLI modules in MeVisLab: https://www.youtube.com/watch?v=FSCrmiWEcbA
 
* Demo of CLI modules in MeVisLab: https://www.youtube.com/watch?v=FSCrmiWEcbA
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* Previous Project Week project from 2013: http://www.na-mic.org/Wiki/index.php/2013_Summer_Project_Week:CLI_modules_in_MeVisLab
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* Previous Project Week project from 2013: [[2013_Summer_Project_Week:CLI_modules_in_MeVisLab|CLI modules in MeVisLab]]
 +
* Link to additional planning documents (only accessible with account): https://collab.mevis.fraunhofer.de/display/CLIFD/CLI-Frontier+Demo+Home

Latest revision as of 22:49, 6 January 2016

Home < 2016 Winter Project Week < Projects < BRAINSFit in MeVisLab

  • Screenshot of CLI_BrainsFIT module panel in MeVisLab

Key Investigators

  • Hans Meine
  • Steve Pieper
  • Adam Rankin (observer)

Project Description

Objective Approach and Plan Progress and Next Steps
  • Perform interoperability tests with "interesting" CLI modules in MeVisLab
  • Leverage Siemens' Syngo.Frontier platform for integrating CLI modules
  • Potentially interesting CLIs discussed so far:
    • BrainsFIT
    • CIP (Chest Imaging Platform)
    • UKFTractography
  • Identify and address potential blockers for using these CLIs in MeVisLab/Frontier
  • Design a small demo GUI / visualization
  • Also check interoperability with fiducial support (cf. Nicole's recent coordinate system fixes)
  • pointfile support added to ctk-cli
  • ctk-cli properly moved to MeVisLab's ThirdParty repository
  • Issue filed about pointfile addition to spec / XSD
  • got simple network with CIP's CLI modules running in MeVisLab
    • no fatal issues
    • only one seed point can be passed to lesion segmentation

Background and References

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