Difference between revisions of "2016 Winter Project Week/Projects/Cluster-Driven Lung Segmentation"
From NAMIC Wiki
| Line 19: | Line 19: | ||
! style="text-align: left; width:27%" | Objective | ! style="text-align: left; width:27%" | Objective | ||
<!-- Add a bulleted list of key points --> | <!-- Add a bulleted list of key points --> | ||
| − | * Consolidation of | + | * Consolidation of Lung Nodule detection and segmentation algorithms into pipelines. |
| − | * Iterative parameter-space testing of pipelines in cluster-computing environments | + | * Iterative parameter-space testing of pipelines in cluster-computing environments. |
| − | * Perform evaluations against expert-contoured segmentations | + | * Perform evaluations against expert-contoured segmentations. |
! style="text-align: left; width:27%" | Approach | ! style="text-align: left; width:27%" | Approach | ||
<!-- Add a bulleted list of key points --> | <!-- Add a bulleted list of key points --> | ||
| − | * Use LIDC Data | + | * Explore and optimize existing Lung Nodule detection/segmentation tools. |
| + | * Configure and launch StarCluster Nodes on AWS to run pipelines. | ||
| + | * Use LIDC Data for evaluation of pipelines (~1200+ CT Images with manual contours). | ||
| + | * Evaluate Segmentation pipelines against manual contours using metrics such as SimpleITK filters, Dice, Hausdorff, and Radiomics. | ||
| + | |||
| + | |||
! style="text-align: left; width:27%" | Progress | ! style="text-align: left; width:27%" | Progress | ||
<!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next --> | <!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next --> | ||
| − | * StarCluster | + | * Exploring the Lesion-Size Toolbox algorithms for Lung Nodule detection. |
| − | + | * Configured StarCluster/AWS testing pipeline with time and cost estimates | |
|} | |} | ||
==Background and References== | ==Background and References== | ||
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --> | <!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --> | ||
Revision as of 16:25, 16 December 2015
Home < 2016 Winter Project Week < Projects < Cluster-Driven Lung Segmentation
Key Investigators
- Vivek Narayan (Dana Farber)
- Raúl San José (BWH)
- Dan Blezek (Isomics, Inc.)
- Steve Pieper(Isomics, Inc.)
- Chintan Parmar (Dana Farber)
Project Description
Objective
|
Approach
|
Progress
|
|---|
