Difference between revisions of "2017 Winter Project Week/Diffusely abnormal white matter segmentation with 3d U-net"

From NAMIC Wiki
Jump to: navigation, search
 
(3 intermediate revisions by one other user not shown)
Line 11: Line 11:
 
* Sandy Wells (BWH)
 
* Sandy Wells (BWH)
 
* Tina Kapur (BWH)
 
* Tina Kapur (BWH)
* Sandy Wells (BWH)
+
* Charles Guttmann (BWH)
 
* Hans Meine (Univ. Bremen, Fh MEVIS)
 
* Hans Meine (Univ. Bremen, Fh MEVIS)
  
Line 22: Line 22:
 
|
 
|
 
<!-- Objective bullet points -->
 
<!-- Objective bullet points -->
* Develope an automated system that accurately segments diffusely abnormal white matter
+
* Diffusely abnormal white matter (“DAWM”) are fuzzy-bordered areas of subtly increased signal
 +
intensity on proton density or T2-weighted images. These abnormalities have been referred to as dirty white matter or dirty-appearing white matter. The goal is to develop an automated system that accurately segments diffusely abnormal white matter.
 
|
 
|
 
<!-- Approach and Plan bullet points -->
 
<!-- Approach and Plan bullet points -->
Line 28: Line 29:
 
|
 
|
 
<!-- Progress and Next steps bullet points (fill out at the end of project week) -->
 
<!-- Progress and Next steps bullet points (fill out at the end of project week) -->
*
+
* The 3D-Unet architecture is implemented in Lasagne and it is currently being trained.
 
|}
 
|}

Latest revision as of 15:29, 6 June 2017

Home < 2017 Winter Project Week < Diffusely abnormal white matter segmentation with 3d U-net

Key Investigators

  • Mohsen Ghafoorian (BWH, Radboud University)
  • Bram Platel (Radboud University)
  • Sandy Wells (BWH)
  • Tina Kapur (BWH)
  • Charles Guttmann (BWH)
  • Hans Meine (Univ. Bremen, Fh MEVIS)

Project Description

Objective Approach and Plan Progress and Next Steps
  • Diffusely abnormal white matter (“DAWM”) are fuzzy-bordered areas of subtly increased signal

intensity on proton density or T2-weighted images. These abnormalities have been referred to as dirty white matter or dirty-appearing white matter. The goal is to develop an automated system that accurately segments diffusely abnormal white matter.

  • We would like to use the 3D unet that is shown to be a great architecture for biomedical image segmentation.
  • The 3D-Unet architecture is implemented in Lasagne and it is currently being trained.