Difference between revisions of "2017 Winter Project Week/Electron App to add, navigate and visualize DICOM images"

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==Key Investigators==
 
==Key Investigators==
 
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* Smruti Padhy (McGovern Institute for Brain Research, Massachusetts Institute of Technology)
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* Satrajit Ghosh (McGovern Institute for Brain Research, Massachusetts Institute of Technology)
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* Mathias Goncalves (McGovern Institute for Brain Research, Massachusetts Institute of Technology)
  
 
==Project Description==
 
==Project Description==
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* Add functionality to an Electron App, BrainVerse - An electronic laboratory notebook, to allow adding, navigating and visualizing DICOM images
 
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* Explore Electron API to access and navigate files within a local directory   
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* Build GUI to acquire DICOM images
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** Create a form to input values and trigger fMRI scanner and save the acquired images from the scanner in the local app directory
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** Encode the provenance information of the DICOM image to a jsonld file
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** Further, the files would be sent to a remote triple store
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* Build an interface to display the acquired images directory
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**Allow navigation within the directory
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**Search functionality could be provided
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* Display images in the app interface
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**Integrate a viewer with the app to visualize a DICOM image
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<!-- Progress and Next steps bullet points (fill out at the end of project week) -->
 
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* Built a GUI to obtain DICOM images from a remote server and copy to a given local dir
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* Tested Electron IPC mechanism with File API to list files/directories in a given directory required to navigate DICOM images.
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** Tested DICOMzero and started integrating with Brainverse
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* Explored different DICOM viewers: Papaya, viewerjs, AMI
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*Integrated Papaya with BrainVerse
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*Next Steps
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** Finish adding navigation support for files/directories and build a GUI for it
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** Further investigate DICOM viewers to be invoked while opening a file
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** Capturing provenance information to a jsonld file
 
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==Background and References==
 
==Background and References==
 
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* Electron: http://electron.atom.io/
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* DICOM: http://dicom.nema.org/
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* BrainVerse: https://github.com/ReproNim/brainverse

Latest revision as of 16:22, 13 January 2017

Home < 2017 Winter Project Week < Electron App to add, navigate and visualize DICOM images

Key Investigators

  • Smruti Padhy (McGovern Institute for Brain Research, Massachusetts Institute of Technology)
  • Satrajit Ghosh (McGovern Institute for Brain Research, Massachusetts Institute of Technology)
  • Mathias Goncalves (McGovern Institute for Brain Research, Massachusetts Institute of Technology)

Project Description

Objective Approach and Plan Progress and Next Steps
  • Add functionality to an Electron App, BrainVerse - An electronic laboratory notebook, to allow adding, navigating and visualizing DICOM images
  • Explore Electron API to access and navigate files within a local directory
  • Build GUI to acquire DICOM images
    • Create a form to input values and trigger fMRI scanner and save the acquired images from the scanner in the local app directory
    • Encode the provenance information of the DICOM image to a jsonld file
    • Further, the files would be sent to a remote triple store
  • Build an interface to display the acquired images directory
    • Allow navigation within the directory
    • Search functionality could be provided
  • Display images in the app interface
    • Integrate a viewer with the app to visualize a DICOM image
  • Built a GUI to obtain DICOM images from a remote server and copy to a given local dir
  • Tested Electron IPC mechanism with File API to list files/directories in a given directory required to navigate DICOM images.
    • Tested DICOMzero and started integrating with Brainverse
  • Explored different DICOM viewers: Papaya, viewerjs, AMI
  • Integrated Papaya with BrainVerse
  • Next Steps
    • Finish adding navigation support for files/directories and build a GUI for it
    • Further investigate DICOM viewers to be invoked while opening a file
    • Capturing provenance information to a jsonld file

Background and References

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