Difference between revisions of "2017 Winter Project Week/PyRadiomics"

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(Added images of the structure and location of the toolbox in the Radiomics Workflow)
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* Present, meet collaborators...
 
* Present, meet collaborators...
 
* Discuss issues related to integration with Slicer: external packages, numpy version, Slicer module UI
 
* Discuss issues related to integration with Slicer: external packages, numpy version, Slicer module UI
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* Discuss issues related to enhancing performance using C code
 
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<!-- Progress and Next steps bullet points (fill out at the end of project week -->
 
<!-- Progress and Next steps bullet points (fill out at the end of project week -->
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* Introduced PyRadiomics to the community
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* There are still some issues with the packaging of the extension, SlicerRadiomics. Numpy issue is resolved, PyRadiomics works with numpy 1.9.2, adjusted minimum requirements
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* C code performance enhancement is written, but is still causing some issues during compilation. Switch setup to use skbuild and cmake. Latest (offline) tests work with setup.py develop and setup.py test.
 
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==Background and References==
 
==Background and References==
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->

Revision as of 18:35, 12 January 2017

Home < 2017 Winter Project Week < PyRadiomics

Key Investigators

  • Joost van Griethuysen
  • Hugo Aerts
  • Steve Pieper
  • Jean-Christophe Fillion-Robin
  • Andrey Fedorov

Project Description

Objective Approach and Plan Progress and Next Steps
  • Introduce PyRadiomics to the community
  • Present, meet collaborators...
  • Discuss issues related to integration with Slicer: external packages, numpy version, Slicer module UI
  • Discuss issues related to enhancing performance using C code
  • Introduced PyRadiomics to the community
  • There are still some issues with the packaging of the extension, SlicerRadiomics. Numpy issue is resolved, PyRadiomics works with numpy 1.9.2, adjusted minimum requirements
  • C code performance enhancement is written, but is still causing some issues during compilation. Switch setup to use skbuild and cmake. Latest (offline) tests work with setup.py develop and setup.py test.

Background and References