Difference between revisions of "2017 Winter Project Week/WhiteMatterAnalysis"

From NAMIC Wiki
Jump to: navigation, search
 
(5 intermediate revisions by the same user not shown)
Line 2: Line 2:
 
<gallery>
 
<gallery>
 
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]
 
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]]
 +
Image:Left CB.png|Left-view Cerebellum
 +
Image:Post CB.png|Posterior-view Cerebellum
 +
Image:Left ParsOp.png|Left-view Pars Opercularis
 +
Image:Sup ParsOp.png|Superior-view Pars Opercularis
 +
 
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" -->
 
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" -->
 
</gallery>
 
</gallery>
Line 14: Line 19:
  
 
==Project Description==
 
==Project Description==
 +
This project is part of the whitematteranalysis software that provides an automated whole brain tractgoraphy registration and segmentation framework. The aim of this project is to integrate a new Slicer module FiberEndpointAnalysis into the whitematteranalysis pipeline.
 +
 
{| class="wikitable"
 
{| class="wikitable"
 
! style="text-align: left; width:27%" |  Objective
 
! style="text-align: left; width:27%" |  Objective
Line 21: Line 28:
 
|
 
|
 
<!-- Objective bullet points -->
 
<!-- Objective bullet points -->
* New Slicer CLI module: FiberEndPointFromLabelMap
+
Calculate the overlap of fiber tract (endpoint regions) with anatomical parcellation (e.g. freesurfer) or functional region (e.g. fMRI).
* New script in whitematteranalysis to call the module in the fiber clustering pipeline.
 
* Documentation about the new module and script.
 
 
|
 
|
 
<!-- Approach and Plan bullet points -->
 
<!-- Approach and Plan bullet points -->
*  
+
* Release the FiberEndPointFromLabelMap module as part of SandBox in SlicerDMRI.
 +
* Integrate the module into the whitematteranalysis software.
 +
* Testing and documentation about the new functionality.
 
|
 
|
 
<!-- Progress and Next steps bullet points (fill out at the end of project week) -->
 
<!-- Progress and Next steps bullet points (fill out at the end of project week) -->
*
+
* Done: Module released in SandBox: https://github.com/SlicerDMRI/Sandbox
 +
* Done: Integrate EndpointAnalysis into whitematteranalysis: https://github.com/SlicerDMRI/whitematteranalysis
 +
* Done: Documentation: https://github.com/SlicerDMRI/whitematteranalysis/wiki/Running-the-Clustering-Pipeline#commands-to-do-endpoint-analysis
 +
* Done: Testing finished.
 
|}
 
|}
  

Latest revision as of 15:53, 13 January 2017

Home < 2017 Winter Project Week < WhiteMatterAnalysis

Key Investigators

  • Fan Zhang, BWH
  • Shun Gong, BWH
  • Isaiah Norton, BWH
  • Ye Wu, BWH
  • Lauren J. O'Donnell, BWH

Project Description

This project is part of the whitematteranalysis software that provides an automated whole brain tractgoraphy registration and segmentation framework. The aim of this project is to integrate a new Slicer module FiberEndpointAnalysis into the whitematteranalysis pipeline.

Objective Approach and Plan Progress and Next Steps

Calculate the overlap of fiber tract (endpoint regions) with anatomical parcellation (e.g. freesurfer) or functional region (e.g. fMRI).

  • Release the FiberEndPointFromLabelMap module as part of SandBox in SlicerDMRI.
  • Integrate the module into the whitematteranalysis software.
  • Testing and documentation about the new functionality.

Background and References