Difference between revisions of "AHM 2009"

From NAMIC Wiki
Jump to: navigation, search
Line 178: Line 178:
# Andriy Fedorov SPL-BWH
# Andriy Fedorov SPL-BWH
# Stephen Aylward Kitware
# Stephen Aylward Kitware
#      Will Schroeder Kitware
#      Karthik Krishnan Kitware
#      Sebastien Barre Kitware
# Zhexing Liu NIRAL, UNC
# Zhexing Liu NIRAL, UNC
# Sylvain Gouttard SCI Institute
# Sylvain Gouttard SCI Institute

Revision as of 17:05, 15 December 2008

Home < AHM 2009


This is the home page for the 2009 NA-MIC all hands meeting (AHM). NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click here.

For information about the January 2009 project week, see below or click here.

For information about Utah as a travel destination click here.

View of the City
SLC The 2009 AHM, EAB and Project Week will be held in Salt Lake City, UT, January 5-9 2009.



Time Monday, January 5 Tuesday, January 6 Wednesday, January 7 Thursday, January 8 Friday, January 9
Project Activities in Capitol B-C Project Activities in Capitol B-C Project Activities in Capitol B-C AHM in Capitol A-B, EAB in Olympus B

Project Activities in Olympus A

Project Activities in Capitol B-C
7:30-8:00 Breakfast Breakfast Breakfast Breakfast
8:00-10:00 9:30 Core 1 and 2 PI closed session in Capitol A Project Work
8:00-9:00 How to use NITRC and slicer(Steve, Terry)
9:00-10:00 how to use batchmake and xnat to process larger studies (Julien and Dan Marcus) in Amethyst 1
Project Work
8:00-9:00 Tutorial Review and Judging Amethyst 1
8:00 Introduction, Ron Kikinis

8:05 NA-MIC Highlights (Ross Whitaker)
Roadmap Projects
8:35: JHU/Queens (Gabor Fichtinger)
8:55: UNC (Heather Cody)
9:15: PNL (Marek Kubicki)
9.35: Mind Institute (Jeremy Bockolt)

Project Work
10:00-10:30 Core 1 and 2 PI closed session Coffee Coffee Coffee Coffee
10:30-12:00 Core 1 and 2 PI closed session Project Work Project Work


10:30: Iowa collaboration (Nicole Grosland)
10:45: Wake Forest collaboration (Chris Wyatt)
11:00: Georgetown U. collaboration (Kevin Cleary)
11:15: UNC collaboration (Dinggang Shen)
11:30: Mario Negri Collaboration (Luca Antiga)
11:45: Discussion

Project Work
12:00-1:00 Lunch Lunch
Lunch Adjourn
1:00-3:00 Begin Project Activities: Introduce Projects and Participants DTI Discussion (Sonia, Randy, Others) Amthyst 1 Project Work
Python Modules (Luca Antiga)

Tools and Tutorials (coordinator)
1:00-1:20 Slicer (Steve Pieper)
1:20-1:40 Plug-ins for Slicer (Jim Miller)
1:40-2:00 Non-interactive tools (Stephen Aylward)
2:00-3:00 Tutorial Contest: Presentations by the winners (Randy Gollub)

3:00-3:30 Coffee Coffee Coffee Coffee
3:00-5:00 3:30-4:30 GUI Testing and Developing Test Modules for Slicer (Sebastien) Amethyst 1 3:30-4:30 Cell Segmentation (Alex G)
Project Work
TBD Amethyst 1
Project Work
3:00-5:00 Meshing Tutorial (Nicole Grosland, Vincent Magnotta)
Amethyst 1
Olympus B
3:00-4:00 Discussion with NA-MIC Leadership
4:00-5:00 Closed Session
05:00-07:00 05:00-06:00 Meshing Breakout 6:00 Optional: Beer at Murphy's (like last year)

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 5th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

Dates. Venue. Registration


  • The All Hands Meeting and External Advisory Board Meeting will be held on Thursday, January 8th.
  • Project Activities will be held rest of the week between Monday, January 5th and Friday, January 9th.

Venue: The venue for the meeting is Marriot City Center, Salt Lake City, Utah Mariott City Center, Salt Lake City, Utah. (Floorplan). Please either call the hotel at 1-801-961-8700 or 1-866-961-8700 (toll free) or book online by December 4, 2008 using the code SCISCIA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms.

Registration: We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2009/registration.html for online registration. This registration must be completed by December 12, 2008.

Connectivity We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.


Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration. The organizers will periodically publish the list of registered attendees in the space below. Attendees should NOT add their names in this section. This list is a snapshop as of 00:09, 9 December 2008 (UTC)

Project Week and AHM

  1. Koen Van Leemput MIT CSAIL Algorithms
  2. Bjoern Menze MIT CSAIL Algorithms
  3. Archana Venkataraman MIT CSAIL Algorithms
  4. Polina Golland MIT CSAIL Algorithms
  5. Michal Depa MIT CSAIL Algorithms
  6. Vandana Mohan Georgia Inst of Technology Algorithms Core 2
  7. Ipek Oguz UNC Core 1
  8. Martin Styner University of North Carolina Core 1
  9. Ivan Kolesov Georgia Tech Core 1
  10. Steve Pieper Isomics, Inc. Core 2 Core 6
  11. Marek Kubicki PNL_BWH CORE 3
  12. Doug Terry Psychiatry Neuroimaging Lab Core 4 Driving Biological Problems
  13. Randy L. Gollub MGH Core 5
  14. Alexander Yarmarkovich ISOMIC core2
  15. Siddharth Vikal Queens University DBP 2
  16. Bill Lorensen EAB EAB
  17. Chris Johnson EAB EAB
  18. Curtis Lisle KnowledgeVis, LLC Engineering
  19. Nicole Aucoin BWH Engineering
  20. Daniel Marcus Washington University Engineering
  21. Kathryn Hayes Brigham and Womens Hospital Engineering Core
  22. Nobuhiko Hata Brigham and Womens Hospital External
  23. James Miller GE Global Research
  24. Kiyoyuki Chinzei AIST IGT Intelligent Surgical Instrument Projects
  25. Katie Mastrogiacomo SPL - BWH Leadership
  26. Ron Kikinis SPL - BWH Leadership
  27. Yanling Liu SAIC-Frederick, Inc. NCI-FrederickABCC
  28. Austin Ramme The University of Iowa The Center for Computer-Aided Design CCAD
  29. Kiran Shivanna The University of Iowa The Center for Computer-Aided Design CCAD
  30. Nicole Grosland The University of Iowa The Center for Computer-Aided Design CCAD
  31. Vincent Magnotta The University of Iowa The Center for Computer-Aided Design CCAD
  32. Sonia Pujol Surgical Planning Lab, Brigham Womens Hosp Training
  33. Clement Vachet UNC UNC DBP2
  34. Cedric Mathieu UNC UNC DBP2
  35. Madeleine Seeland LMI
  36. Raul San Jose LMI-BWH
  37. James Ross SPL-BWH
  38. Sylvain Bouix PNL
  39. Peter Savadjiev LMI/PNL, Brigham Womens Hospital
  40. C-F Westin, LMI, Brigham
  41. Andriy Fedorov SPL-BWH
  42. Stephen Aylward Kitware
  43. Will Schroeder Kitware
  44. Karthik Krishnan Kitware
  45. Sebastien Barre Kitware
  46. Zhexing Liu NIRAL, UNC
  47. Sylvain Gouttard SCI Institute
  48. Casey Goodlett SCI Institute
  49. Marcel Prastawa SCI Institute
  50. Guido Gerig SCI Institute
  51. Marco Ruiz UCSD
  52. Petter Risholm Brigham Womens Hospital
  53. Xiaodong Tao GE Global Research
  54. Yi Gao
  55. Gregory Sharp MGH
  56. arnaud gelas Harvard Medical School
  57. alexandre gouaillard Harvard Medical School
  58. kishore mosaliganti Harvard Medical School
  59. Jeremy Bockholt MRN DBP2
  60. Mark Scully MRN DBP2

AHM Only

  1. Chris Wyatt
  2. Fred Prior EAB
  3. Gabor Fichtinger Queens Univ
  4. German Cavelier NIH-NIMH
  5. Heather Cody Hazlett University of North Carolina
  6. Michael Ackerman National Library of Medicine at NIH
  7. Mikhail Milchenko Washington University in St Louis
  8. Morry Blumenfeld EAB
  9. Sandy Napel EAB