AHM 2009

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Home < AHM 2009

Introduction

This is the home page for the 2009 NA-MIC all hands meeting (AHM). NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click here.

For information about the January 2009 project week, see below or click here.

For information about Utah as a travel destination click here.

View of the City
SLC The 2009 AHM, EAB and Project Week will be held in Salt Lake City, UT, January 5-9 2009.

Agenda

(preliminary)

Time Monday, January 5 Tuesday, January 6 Wednesday, January 7 Thursday, January 8 Friday, January 9
Project Activities in Capitol B-C Project Activities in Capitol B-C Project Activities in Capitol B-C AHM in Capitol A-B, EAB in Olympus B

Project Activities in Olympus A

Project Activities in Capitol B-C
7:30-8:00 Breakfast Breakfast Breakfast Breakfast
8:00-10:00 9:30 Core 1 and 2 PI closed session in Capitol A Project Work
8:00-9:00 How to use NITRC and slicer(Steve, Terry)

9:00-10:00 Using Batchmake and XNAT to process large studies (Julien Jomier and Dan Marcus) in Amethyst 1

Project Work
8:00-9:00 Tutorial Review and Judging Amethyst 1
8:00 Introduction, Ron Kikinis

8:05 NA-MIC Highlights (Ross Whitaker)
Roadmap Projects
8:35: JHU/Queens (Gabor Fichtinger)
8:55: UNC (Heather Cody)
9:15: PNL (Marek Kubicki)
9.35: Mind Institute (Jeremy Bockolt)

Project Work
TBD
10:00-10:30 Core 1 and 2 PI closed session Coffee Coffee Coffee Coffee
10:30-12:00 Core 1 and 2 PI closed session Project Work Project Work

TBD

Collaborations
10:30: Iowa collaboration (Nicole Grosland)
10:45: Wake Forest collaboration (Chris Wyatt)
11:00: Georgetown U. collaboration (Kevin Cleary)
11:15: UNC collaboration (Dinggang Shen)
11:30: Mario Negri Collaboration (Luca Antiga)
11:45: Discussion

Project Work
12:00-1:00 Lunch Lunch
Lunch
Lunch Adjourn
1:00-3:00 Begin Project Activities: Introduce Projects and Participants DTI Discussion (Sonia, Randy, Others) Amethyst 1 Project Work
Python Modules (Luca Antiga)

Tools and Tutorials (coordinator)
1:00-1:20 Slicer (Steve Pieper)
1:20-1:40 Plug-ins for Slicer (Jim Miller)
1:40-2:00 Non-interactive tools (Stephen Aylward)
2:00-3:00 Tutorial Contest: Presentations by the winners (Randy Gollub)

3:00-3:30 Coffee Coffee Coffee Coffee
3:00-5:00 3:30-4:30 GUI Testing and Developing Test Modules for Slicer (Sebastien) Amethyst 1 3:30-4:30 Cell Segmentation (Alex G)
Project Work
TBD Amethyst 1
Project Work
3:00-5:00 Meshing Tutorial (Nicole Grosland, Vincent Magnotta)
Iowa_Meshing_Tutorial
Amethyst 1
EAB
Olympus B
3:00-4:00 Discussion with NA-MIC Leadership
4:00-5:00 Closed Session
05:00-07:00 05:00-06:00 Meshing Breakout 6:00 Optional: Beer at Murphy's (like last year)

Please note that there will be a Core 1&2 Site PI Retreat on the morning of Monday, January 5th. This is a closed session for Core 1&2 Site PIs, with no delegates. The topic is the competitive renewal.

Dates. Venue. Registration

Dates:

  • The All Hands Meeting and External Advisory Board Meeting will be held on Thursday, January 8th.
  • Project Activities will be held rest of the week between Monday, January 5th and Friday, January 9th.

Venue: The venue for the meeting is Marriot City Center, Salt Lake City, Utah Mariott City Center, Salt Lake City, Utah. (Floorplan). Please either call the hotel at 1-801-961-8700 or 1-866-961-8700 (toll free) or book online by December 4, 2008 using the code SCISCIA to get rooms at $139/night. Please note that we do need attendees to use this hotel in order to not incur additional charges for the use of conference rooms.

Registration: We are charging a registration fee to all participants ($200 for AHM only, and $450 for AHM+). The fee covers the costs of the facilities and food provided. In order to keep the fee low, we need to get a sufficient number of hotel nights by our participants. See above for more on this. Please click http://www.sci.utah.edu/namic2009/registration.html for online registration. This registration must be completed by December 12, 2008.

Connectivity We have three wireless access points at the AHM. Two of them are located in the capital ballroom. One is named capital-ballroom, the other is named capital-ballroom2. If one access point doesn't let you connect it is probably overloaded. In that case, please try connecting to the other one.

Attendees

Please follow http://www.sci.utah.edu/namic2009/registration.html to complete your online registration. The organizers will periodically publish the list of registered attendees in the space below. Attendees should NOT add their names in this section. This list is a snapshop as of 20:19, 31 December 2008 (UTC)

  1. Michael Ackerman National Library of Medicine at NIH
  2. Luca Antiga Mario Negri Institute
  3. Kevin Archie Washington University
  4. Nicole Aucoin BWH
  5. Stephen Aylward Kitware, Inc.
  6. Sebastien Barre Kitware, Inc.
  7. Morry Blumenfeld EAB
  8. H Jeremy Bockholt The Mind Research Network
  9. Sylvain Bouix PNL
  10. Josh Cates SCI Institute
  11. German Cavelier NIH-NIMH
  12. David Chen NLM
  13. Kiyoyuki Chinzei AIST
  14. Kevin Cleary Georgetown University
  15. Zohara Cohen NIH
  16. Manasi Datar SCI Institute
  17. julien de Siebenthal BWH
  18. Michal Depa MIT CSAIL
  19. Harish Doddi Stanford University
  20. Andriy Fedorov SPL-BWH
  21. Gabor Fichtinger Queens Univ
  22. Yi Gao Georgia Tech
  23. Arnaud Gelas Harvard Medical School
  24. Guido Gerig SCI Institute
  25. Polina Golland MIT CSAIL
  26. Randy L. Gollub MGH
  27. Casey Goodlett SCI Institute
  28. Alexandre Gouaillard Harvard Medical School
  29. Sylvain Gouttard SCI Institute
  30. Jeffrey Grethe UC San Diego
  31. Nicole Grosland The University of Iowa
  32. Ozgur Guler ENT Medical University Innsbruck
  33. Daniel Haehn SPL-BWH
  34. Nathan Hageman UCLA
  35. Nobuhiko Hata Brigham and Womens Hospital
  36. Kathryn Hayes Brigham and Womens Hospital
  37. Heather Cody Hazlett University of North Carolina
  38. Jaesung Hong Kyushu University
  39. Luis Ibanez Kitware, Inc.
  40. Chris Johnson EAB
  41. Ron Kikinis SPL - BWH
  42. Ivan Kolesov Georgia Tech
  43. Karthik Krishnan Kitware, Inc.
  44. Marek Kubicki PNL_BWH
  45. Curtis Lisle KnowledgeVis, LLC
  46. Yanling Liu SAIC-Frederick, Inc.
  47. Zhexing Liu NIRAL, UNC
  48. Terry Lorber Isomics, Inc
  49. Bill Lorensen EAB
  50. Vincent Magnotta The University of Iowa
  51. Daniel Marcus Washington University
  52. Katie Mastrogiacomo SPL - BWH
  53. Cedric Mathieu UNC
  54. Bjoern Menze MIT CSAIL
  55. Mikhail Milchenko Washington University in St Louis
  56. James Miller GE Global Research
  57. Vandana Mohan Georgia Inst of Technology
  58. kishore mosaliganti Harvard Medical School
  59. Sandy Napel EAB
  60. Marc Niethammer UNC Chapel Hill
  61. Guy Nir Technion
  62. Ipek Oguz UNC
  63. Saikat Pal Stanford University
  64. Steve Pieper Isomics, Inc.
  65. Wendy Plesniak Brigham and Womens Hospital
  66. Marcel Prastawa SCI Institute
  67. Fred Prior EAB
  68. Sonia Pujol Surgical Planning Lab, Brigham Womens Hosp
  69. Vidya Rajagopalan Virginia Tech
  70. Austin Ramme The University of Iowa
  71. Petter Risholm Brigham Womens Hospital
  72. James Ross SPL-BWH
  73. Marco Ruiz UCSD
  74. Raul San Jose LMI-BWH
  75. Peter Savadjiev Brigham Womens Hospital
  76. William Schroeder Kitware, Inc.
  77. Mark Scully The Mind Research Network
  78. Madeleine Seeland LMI
  79. Gregory Sharp MGH
  80. Dinggang Shen UNC-Chapel Hill
  81. Kiran Shivanna The University of Iowa
  82. Shantanu Singh The Ohio State University
  83. Martin Styner University of North Carolina
  84. Allen Tannenbaum Georgia Tech
  85. Xiaodong Tao GE Global Research
  86. Doug Terry Psychiatry Neuroimaging Lab
  87. Clement Vachet UNC
  88. Koen Van Leemput MIT CSAIL
  89. Archana Venkataraman MIT CSAIL
  90. Siddharth Vikal Queens University
  91. Xiaogang Wang Massachusetts Institute of Technology
  92. William Wells SPL-BWH
  93. Carl-Fredrik Westin Brigham and Womens Hospital
  94. Ross Whitaker SCI Institute
  95. Nathan Wilson Cardiovascular Simulation, Inc.
  96. Chris Wyatt Virginia Tech
  97. Alexander Yarmarkovich Isomics, Inc
  98. Dr. Terry S Yoo DHHSNIHNLM