Difference between revisions of "AHM 2013"

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[[image:PW-SLC2013.png|300px]]
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Back to [[Events]]
  
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[[Image:PW-SLC2013.png|300px]] [[Image:H2013-Slicer2.png|270px]]
  
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Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.  
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Dates: January 7-11, 2013.
  
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Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event.  Invitations to this call are sent to all na-mic members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.
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Location: Salt Lake City, UT.
  
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The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical.  To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
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== Introduction ==
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{| border="00" cellpadding="8" cellspacing="0"
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|-
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| rowspan="2" align="left" | '''This is the home page for the 2013 NA-MIC all hands meeting (AHM).''' NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.
  
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A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
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For more information about the project weeks in general, click [[Engineering:Programming_Events|'''here''']].  
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= Dates.Venue.Registration =
 
  
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Please [[AHM_2013#Dates_Venue_Registration|click here for Dates, Venue, and Registration]] for this event.
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For information about the January 2013 project week, see below.
  
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= [[AHM_2013#Agenda|'''AGENDA''']] and Project List=
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For information about Utah as a travel destination click [http://www.utah.com '''here'''].
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| style="background: #ebeced"  align="center"| [[Image:SLC.jpg|center|350px|View of the City]]
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|-
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| style="background: #ebeced"|The 2013 AHM, EAB and Project Week will be held <br>'''January 7-11, 2013''', in '''Salt Lake City''', Utah. 
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|}
  
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Please:
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== Dates, Venue, Registration ==
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* [[AHM_2013#Agenda|'''Click here for the agenda for AHM 2013 and Project Week''']].
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{|
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* [[#Projects|'''Click here to jump to Project list''']]
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|align="left" style="width:60%"|
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'''Dates:'''
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* The All Hands Meeting and External Advisory Board Meeting will be held on '''Thursday, January 10th'''.
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* Project Activities will be held rest of the week between '''Monday, January 7th and Friday, January 11th'''.
  
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=Background and Preparation=
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'''Registration:''' Please click [http://www.sci.utah.edu/namic2013.html '''here'''] to register online before '''January 3, 2013'''. All participants must pay a registration fee ('''$250''' for AHM only, and '''$550''' for AHM+Project Week), which covers our catering and facilities costs. 
 +
After 12/25/12 registration prices will increase by $100. Last call registrations after 1/1/13 will be increased by $200.
  
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A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
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'''Venue:''' The venue for the meeting is the Marriott City Center, Salt Lake City, Utah. Please either call the hotel at +1-866-961-8700 (toll free) and mention the group code "sciscia" or book online [http://www.marriott.com/hotels/travel/slccc-salt-lake-city-marriott-city-center/?toDate=1/12/13&groupCode=SCISCIA&fromDate=1/6/13&app=resvlink  '''here''']. Please note that '''''we need attendees to use this hotel''''' in order not to incur additional charges for use of the conference rooms and keep registration fees low.  The group rate is $149/night + tax.  
  
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Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
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|style="width:40%" |[[image:Marriott-floorplan.png|thumb |250px|'''Meeting Rooms:''' See [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ here] for the web version.]]
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|}
  
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=Projects=
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== Agenda==
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* [[2013_Project_Week_Template | Template for project pages]]
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{| border="1" cellpadding="5"
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|- style="background:#eeeeee; font-size:125%; color:#0063B6" align="center"
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| style="width:5%"| '''Time'''
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| style="width:15%" | '''Monday, January 7'''
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| style="width:15%" | '''Tuesday, January 8'''
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| style="width:15%" | '''Wednesday, January 9'''
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| style="width:35%" | '''Thursday, January 10 '''
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| style="width:15%" | '''Friday, January 11'''
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|-
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| style="background:#eeeeee; color:black"|
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| style="background:#ffffff; color:#522200"| '''[[2013_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Capitol BC)''</font>
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| style="background:#dbf3ff; color:#522200"| '''[[2013_Winter_Project_Week|Project Activities]] '''<br><font color="#44AA88">''(Capitol BC)''</font>
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| style="background:#dbf3ff; color:#522200"| '''[[2013_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Capitol BC)''</font>
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| style="background:#F2E5D3; color:#522200"| '''AHM''' <br><font color="#44AA88">''(Capitol ABC)''</font>, '''[http://wiki.na-mic.org/Wiki/index.php/2013_EAB EAB]'''<br>[[2013_Winter_Project_Week|Project Activities]]
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| style="background:#dbf3ff; color:#522200"|'''[[2013_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Capitol BC)''</font>
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|-
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| style="background:#eeeeee; color:black"|'''7:30-8:00'''
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| style="background:#ffffff; color:black"|
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| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font>
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| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font>
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| style="background:#F2E5D3; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font>
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| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font>
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|-
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| style="background:#eeeeee; color:black"|'''8:00-10:00'''
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| <br><font color="#9966cc"></font>
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|9-10am: Breakout Session: [[AHM2013-Performance_Evaluation_Tools|Performance Evaluation Tools]] <br><font color="#44AA88">''(Capitol B)''</font> <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Amethyst)''</font>
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|<br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Amethyst)''</font>
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| '''8-8:05am:''' Welcome (Ron Kikinis) <br>
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'''8:05-9:15am:''' [[AHM_2013_alg_core_presentations | Algorithms Core: Update and Future Plans]] <br> '''9:20-9:55am:''' Recent Developments on Quantitative Multimodal Imaging at Fraunhofer MEVIS. Invited Speaker: Horst Hahn, PhD.<br>
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| style="background:#dbf3ff; color:#522200"|[[2013_Winter_Project_Week|Project Presentations]]<br><font color="#44AA88">''(Capitol BC)''</font>
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|-
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| style="background:#eeeeee; color:black"|'''10:00-10:30'''
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| style="background:#ffffff; color:black"|
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| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
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| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
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| style="background:#F2E5D3; color:black"| Coffee <br>''(General area)''
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| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
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|-
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| style="background:#eeeeee; color:black"|'''10:30-12:00'''
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|
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| <br><font color="#9966cc">Breakout Session: [[AHM2013-IGT|Image Guided Therapy]] <br> ''(Amethyst)''</font> <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Capitol A)''</font>
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|NA-MIC competitive renewal. <br> [[ClosedSession2013|Closed session for TRD PIs and core personnel]]<br><font color="#9966cc">''(Amethyst)''</font>
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| DBP Update and Future Plans<br> '''10:30-10:55am:''' TBI (Jack Van Horn) <br> '''10:55-11:20am:''' Atrial Fibrillation (Rob McLeod) <br> '''11:20-11:45am:''' Huntington's Disease (Hans Johnson) <br> '''11:45-12:10pm:''' Head and Neck Cancer (Greg Sharp, [[Media:NAMIC-AHM-2013-01-Sharp.pdf|Slides]]) <br> '''
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|
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|-
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| style="background:#eeeeee; color:black"|'''12:00-1:00''' 
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| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font>
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| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font> <br>
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| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font><br>
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| style="background:#F2E5D3; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font>
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| style="background:#dbf3ff; color:black"| Boxed Lunch and Adjourn <br><font color="#BB9933">''(Olympus A)''</font>
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|-
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| style="background:#eeeeee; color:black"|'''1:00-3:00'''
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| style="background:#dbf3ff; color:#522200"|[[2013_Winter_Project_Week|Project Presentations]]<br><font color="#44AA88">''(Capitol BC)''</font>
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|  <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Capitol A)''</font>
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|'''DBP Team Meetings''' <br><font color="#44AA88">''(Capitol A)''</font> <br> '''1-2pm:''' [[DBP MGH Head and Neck Cancer]] <br>'''2-3pm:''' [[DBP Utah Atrial Fibrillation]]
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| '''1:15-2pm:'''  [[AHM2013-Engineering_Updates | Engineering Core: Updates and Future Plans]] <br> '''2-2:30pm''' [[AHM_2013 Extensions| Extensions]] <br> '''2:30-3:00pm:''' Outreach (Sonia Pujol, Steve Pieper) <br>
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|
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|-
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| style="background:#eeeeee; color:black"|'''3:00-3:30'''
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| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
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| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
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| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
 +
| style="background:#F2E5D3; color:black"| Coffee <br>''(General area)''
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| style="background:#ffffff; color:black"|
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|-
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| style="background:#eeeeee; color:black"|'''3:00-5:00'''
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|[[AHM2013-Extensions-Workshop|Breakout: Slicer Extensions for Developers]] <br> <font color="#44AA88">''(Capitol BC)''</font> <br>[[AHM2013-PyXNAT|Breakout: PyXNAT]] <br><font color="#44AA88">''(Capitol A)''</font> <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Amethyst)''</font>
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|3-4pm: Breakout Session: [[AHM2013-Real_World_DICOM|Real World DICOM]] <br><font color="#44AA88">''(Capitol B)'' <br> 4-5pm: [[AHM2013-Simple-ITK|Simple ITK Tutorial]]</font><br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Capitol A)''</font>
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|'''DBP Team Meetings''' <br><font color="#44AA88">''(Capitol A)''</font> <br> '''3-4pm:''' [[DBP  UCLA Traumatic Brain Injury]] <br>'''4-5pm:''' [[DBP Iowa Huntington's Disease]]
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|'''3-4pm''': [[2013_EAB|EAB meeting]] (Core, Site, and DBP PIs to join) <br><font color="#9966cc">''(Amethyst)''</font><br> '''4-5pm:''' EAB closed session  <br><font color="#9966cc">''(Amethyst)''</font>
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| style="background:#ffffff; color:black"|
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|-
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| style="background:#eeeeee; color:black"|'''05:00-07:00'''
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| style="background:#dbf3ff; color:black"|
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| style="background:#dbf3ff; color:black"|
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| style="background:#dbf3ff; color:black"|
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| style="background:#F2E5D3; color:black"|'''6:00''' Optional: [http://www.murphysbarandgrillut.com/ Beer at Murphy's] (like last year)
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| style="background:#ffffff; color:black"|
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|}
  
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==TBI==
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'''General Announcements:'''
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* [[4D DTI tractography in Slicer for TBI | Coregistration of structural and diffusion MRI towards 4D modeling of TBI]] (Bo Wang, Andrei Irimia, Micah Chambers, Jack Van Horn, Marcel Prastawa, Guido Gerig)
 
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* [[Clinically oriented TBI connectivity analysis in Slicer]] (Andrei Irimia, Bo Wang, Micah Chambers, Jack Van Horn, Marcel Prastawa, Guido Gerig)
 
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* [[UKF Tractography in Slicer 4]] (Ryan Eckbo, Yogesh Rathi, Demian Wassermann, C.F Westin, Ron Kikinis)
 
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* [[4D DTI analysis via longitudinal modeling of tract diffusivities]] (Anuja Sharma, Bo Wang, Andrei Irimia, Micah Chambers, Jack Van Horn, Marcel Prastawa, Guido Gerig)
 
  
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==Atrial Fibrillation==
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**Will be added here
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* [[2013_Project_Week:CARMA_Scar_Segmentation|Scar Identification (LiangJia Zhu, Yi Gao, Josh Cates, Rob MacLeod, Allen Tannenbaum)]]
 
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* [[2013_Project_Week:CARMA_PV_Antrum_Cut|SLICER MODULE: PV Antrum Cut Filter (Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod)]]
 
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* [[2013_Project_Week:CARMA_LA_Seg_Gopal|SLICER MODULE: Automated LA Segmentation by Gopal (Gopal Veni, Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod)]]
 
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* [[2013_Project_Week:CARMA_2D_Dilate|SLICER MODULE: 2D Dilate Filter (Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod)]]
 
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* [[2013_Project_Week:CARMA_PractialLASeg|SLICER WORKFLOW: Practical Manual LA Segmentation in Slicer (Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod)]]
 
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* [[2013_Project_Week:CARMA_RT_MRI|PROJECT PLANNING: Real Time MRI in Slicer with OpenIGT (Alan Morris, Ashvin George, Josh Cates, Rob MacLeod)]]
 
  
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==Slicer4 Extensions==
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==Registered Attendees==
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* [[2013_Project_Week:DTIExtension|Diffusion Tensor Images processing tools as Slicer4 extensions (Francois Budin, Adrien Kaiser, Martin Styner)]]
 
  
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==Huntington's Disease==
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<big>'''NOTE:'''</big> <font color="maroon">The registered attendee list will be posted here by the organizers.  '''DO NOT''' add your name to this list yourself.</font>  To register, please click [http://www.sci.utah.edu/namic2013-registration.html here].
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* [[2013_Project_Week:QualityAssuranceModule|Quality assurance module enhancements]] (Dave Welch, Hans Johnson)
 
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* [[2013_Project_Week:PythonModules|Slicer interface to add Python modules to Slicer environment]] (Dave Welch)
 
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* [[2013_Project_Week:FastFiducialRegistrationModule|Fast fiducial registration module]] (Dave Welch, Nicole Aucoin)
 
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* [[2013_Project_Week:4DShapeAnalysis | 4D shape analysis: application to HD]] (James Fishbaugh, Marcel Prastawa, Hans Johnson, Guido Gerig)
 
  
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==Head and Neck Cancer==
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As of 9:30 AM 1/2/2013
−
* [[2013_Winter_Project_Week:MABS|Multi atlas-based segmentation]] (Sharp, Shusharina, Golland)
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# Ackerman , Michael , National Library of Medicine, NIH, OHPCC
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* [[2013_Winter_Project_Week:Hybrid_registration|Hybrid interactive-automatic registration]] (Shusharina, Sharp, Pieper)
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# Aucoin , Nicole , BWH
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* [[2013_Winter_Project_Week:PointSetRegistration|Constrained Point Set Registration]] (Kolesov, Karasev, Sharp, Tannenbaum)
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# Aylward , Stephen , Kitware, Inc.
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* [[2013_Winter_Project_Week:InteractiveSegmentation|Interactive Segmentation and Supporting Utilities]] (Karasev, Kolesov, Tannenbaum)
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# Batmanghelich , Kayhan , MIT
−
 
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# Bengali , Salma , SCI Institute
−
==Stroke==
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# Blumenfeld , Morry , EAB
−
* [[2013_Project_Week:WMH_Segmentation_for_Stroke|White Matter Hyperintensity Segmentation in Stroke (Adrian Dalca, Ramesh Sridharan, Polina Golland)]]
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# Budin , Francois , UNC
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* [[2013_Project_Week:Imaging_Genetic_for_Stroke|Imaging Genetics for Stroke (Adrian Dalca, Kayhan Batmanghelich, Polina Golland)]]
+
# Cates , Joshua , SCI Institute
−
 
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# Cavelier , German , NIH-NIMH
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==Image-Guided Interventions==
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# Cevidanes , Lucia , University of Michigan
−
* [[2013_Project_Week:UnitedSlicerIGTExtension|United SlicerIGT extension, repository, website]] (Tamas Ungi, Junichi Tokuda, Adam Rankin)
+
# Chauvin , Laurent , Brigham and Womens Hospital
−
* [[2013_Project_Week:BRAINSFit_new_features|BRAINSFit in ITK4: extra functionality and testing for prostate MR registration (Andrey, Hans)]]
+
# Dalca , Adrian , MIT
−
* [[2013_Project_Week:PkModeling_for_prostate_DCE_MRI|PkModeling for prostate DCE MRI (Jim, Andrey)]]
+
# Datar , Manasi , SCI Institute
−
* [[2013_Winter_Project_Week_Gyne_Brachy|iGyne Needle Digitalization]] (Alireza Mehrtash, Csaba Pinter)
+
# Fedorov , Andriy , Harvard Medical School
−
* [[2013_Project_Week:AbdominalNavigationModule|Abdominal navigation module (Junichi Tokuda, Atsushi Yamada)]]
+
# Fillion-Robin , Jean-Christophe , Kitware Inc.
−
* [[2013_Project_Week:MobileImageOverlay|Mobile image overlay augmented reality needle guidance]] (Adam Rankin, Tamas Ungi)
+
# Finet , Julien , Kitware Inc.
−
* [[2013_Project_Week:MRIAblation|Thermal monitoring tools for MRI-guided laser ablation therapy of brain tumor]] (Laurent Chauvin, Noby Hata, Hatsuho Mamata)
+
# Fishbaugh , James , SCI Institute
−
 
+
# Gao , Yi , BWH
−
==Radiation Therapy==
+
# Gardner , Greg , SCI Institute
−
* [[2013_Project_Week:DicomRtExport|SlicerRT: DICOM RT export]] (Kevin Wang, Greg Sharp, Csaba Pinter)
+
# Gerig , Guido , SCI Institute
−
* [[2013_Project_Week:RtBeamGeometry|SlicerRT: Beam geometry widgets]] (Csaba Pinter, Greg Sharp)
+
# Grethe , Jeffrey , University of California, San Diego
−
 
+
# Haehn , Daniel , Boston Childrens Hospital
−
==Medical Robotics==
+
# Hata , Noby , BWH
−
* [[Configurable fiducial-based device to image registration]] (Junichi Tokuda)
+
# Ibanez , Luis , KITWARE Inc.
−
* [[2013_Project_Week:RobotizedUltrasoundProbeFor3DVolumeReconstruction| Robotized Ultrasound Probe For 3D Volume Reconstruction]] (Laurent Chauvin, Junichi Tokuda, Noby Hata)
+
# Iftekahruddin , Khan , Old Dominion University
−
* [[2013_Project_Week:AgileMedicalRobot | Agile medical robotics development with Slicer: Case study with MRI compatible robot(Taka Kato, Atsushi Yamada, Noby Hata, Kazuhumi Onuma)]]
+
# Irimia , Andrei , University of California, Los Angeles
−
* [[2013_Project_Week:InvestigatingRoleOfOpenSourceInTranslationalResearch | Investigating role of open source in translational research (Miki Kumekawa)]]
+
# Johnson , Chris , EAB
−
 
+
# Johnson , Hans , The University of Iowa
−
==NA-MIC Kit Internals==
+
# Kaiser , Adrien , UNC
−
*[[2013_Project_Week:WebbasedAnatomicalTeachingFramework|Web-based anatomical teaching framework for mi2b2]] (Daniel Haehn, Steve Pieper, Sonia Pujol, Randy Gollub, Rudolph Pienaar, Ellen Grant)
+
# Kapur , Tina , Harvard Medical School
−
*[[2013_Project_Week:ITKv4Default|ITKv4 Default in Superbuild]] - [http://www.na-mic.org/Bug/search.php?project_id=3&sticky_issues=on&sortby=last_updated&dir=DESC&hide_status_id=80&tag_string=ITKv4 Issues] (Matt McCormick, Luis Ibanez, Hans Johnson, Jc, Bill Lorensen, Bradley Lowekamp)
+
# Karasev , Peter , Univ of Alabama at Birmingham
−
*[[2013_Project_Week:MarkupsModule|Slicer4 Markups Module]] (Nicole Aucoin)
+
# Kato , Takahisa , Brigham and womens hospital
−
*[[2013_Project_Week:ColorHierarchies|Slicer4 Color Hierarchies]] (Nicole Aucoin)
+
# Kikinis , Ron , SPL, BWH
−
*[[2013_Project_Week:PatientHierarchy|Slicer4 Patient Hierarchy]] (Csaba Pinter, Andrey Fedorov, Nicole Aucoin, Steve Pieper)
+
# Kochis , Donna , Kitware
−
*[[2013_Project_Week:ScalarBar|Slicer4 Scalar bar improvements]] (Kevin Wang, Nicole Aucoin Csaba Pinter)
+
# Kolesov , Ivan , Univ of Alabama at Birmingham
−
*[[2013_Project_Week:CliMatlabInterface|Slicer4 CLI Matlab interface]] (Kevin Wang, Steve Pieper, Csaba Pinter)
+
# Kumar , Sunil , Washington University in St. Louis
−
*[[2013_Project_Week:PETStandardUptakeValueComputation| PET/CT SUV Module for Clinicians]] (Sonia Pujol, Markus Van Tol, Nicole Aucoin)
+
# Kumekawa , Miki , Brigham  Womens Hospital  Chiba University
−
*[[2013_Project_Week:SelfTests|Slicer4 Self Test and Sample Data Refactor]] (Steve Pieper, Jim Miller, Jc)
+
# Li , Rui , GE Global Research
−
*[[2013_Project_Week:SimplifyMRMLReference|Simplify MRML References]] - Issue [http://www.na-mic.org/Bug/view.php?id=2727 #2727] (Alex Yarmarkovich, Steve Pieper, Julien Finet ?, Jc ?)
+
# Little , David , University of California, San Diego
−
*[[2013_Project_Week:SlicerIPythonIntegration|Integration of IPython]] (Jc, Hans Johnson, Dave Welch, Steve Pieper, Matt McCormick)
+
# Lorensen , Bill , EAB
−
*[[2013_Project_Week:SlicerDebianPackage|Slicer Debian package]] (Jc, Dominique Belhachemi, Greg Sharp)
+
# Lowekamp , Bradley ,
−
*[[2013_Project_Week:SimplifyRendererMouseInteraction|Simplify renderer window mouse interaction]] - Mailing list [http://slicer-devel.65872.n3.nabble.com/Left-mouse-button-changes-window-level-Is-it-good-tt4026815.html thread] (Csaba, Steve, Ron, Jc, Greg, Andriy)
+
# MacLeod , Rob , SCI Institute
−
*[[2013_Project_Week:SteeredRegistration|Interactive Registration for Image Guided Therapy]] (Dirk Padfield, Jim Miller, Steve Pieper, Kunlin Cao)
+
# McCormick , Matthew , Kitware, Inc
−
*[[2013_Project_Week:Threaded SimpleITK Modules|Threaded SimpleITK Modules]] (Brad Lowekamp, Steve Pieper)
+
# Mehrtash , Alireza , Brigham and Womens Hospital
−
*[[2013_Project_Week:Slicer Personal Cloud]] (Rui Li, Jim Miller)
+
# Miller , Jim , GE Global Research
−
*[[2013_Project_Week:XNATSlicer|XNATSlicer]] (Sunil Kumar, Dan Marcus, Steve Pieper, etc.)
+
# Morris , Alan , SCI Institute
−
*[[2013_Project_Week:PGP_Keysigning|PGP Keysigning]] (Matt McCormick, Luis Ibanez, Bradley Lowekamp)
+
# Napel , Sandy , EAB
 +
# Onuma , Kazufumi , CANON INC.
 +
# Padfield , Dirk , GE Global Research
 +
# Paniagua , Beatriz , University of North Carolina at Chapel Hill
 +
# Pieper , Steve , Isomics, Inc.
 +
# Pinter , Csaba , Queens University
 +
# Pujol , Sonia , Brigham and Womens Hospital, Harvard Medical School
 +
# Rankin , Adam , Queens University
 +
# Ross , James , Brigham and Womens Hospital
 +
# San Jose , Raul , Brigham and Womens Hospital
 +
# Sharma , Anuja , SCI Institute
 +
# Sharp , Gregory , MGH
 +
# Shen , Dinggang , UNC-Chapel Hill
 +
# Shusharina , Nadya , MGH
 +
# Sridharan , Ramesh , MIT
 +
# Styner , Martin , University of North Carolina
 +
# Tannenbaum , Allen , Univ of Alabama at Birmingham
 +
# Toews , Matthew , BWH, Harvard Medical School
 +
# Tokuda , Junichi , Brigham and Womens Hospital
 +
# Ungi , Tamas , Queens University
 +
# Van Horn , John , University of California Los Angeles
 +
# Veeraraghavan , Harini , Memorial Sloan-Kettering Cancer Center
 +
# Veni , Gopalkrishna , SCI Institute
 +
# Wang , Bo , SCI Institute
 +
# Wang , Kevin , Princess Margaret Hospital
 +
# Wassermann , Demian , Brigham and Womens Hospital
 +
# Welch , David , The University of Iowa
 +
# Wells , William , Brigham and Womens Hospital, HMS
 +
# Whitaker , Ross , SCI Institute
 +
# Yamada , Atsushi , Brigham and Womens Hospital
 +
# Yarmarkovich , Alexander , ISOMIC
 +
# Yoo , Terry , National Library of Medicine, NIH, OHPCC
 +
# Zhu , Liangjia , Univ of Alabama at Birmingham

Revision as of 19:33, 7 January 2013

Home < AHM 2013
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PW-SLC2013.png H2013-Slicer2.png

Dates: January 7-11, 2013.

Location: Salt Lake City, UT.

Introduction

This is the home page for the 2013 NA-MIC all hands meeting (AHM). NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For more information about the project weeks in general, click here.

For information about the January 2013 project week, see below.

For information about Utah as a travel destination click here.

View of the City
The 2013 AHM, EAB and Project Week will be held
January 7-11, 2013, in Salt Lake City, Utah.

Dates, Venue, Registration

Dates:

  • The All Hands Meeting and External Advisory Board Meeting will be held on Thursday, January 10th.
  • Project Activities will be held rest of the week between Monday, January 7th and Friday, January 11th.

Registration: Please click here to register online before January 3, 2013. All participants must pay a registration fee ($250 for AHM only, and $550 for AHM+Project Week), which covers our catering and facilities costs. After 12/25/12 registration prices will increase by $100. Last call registrations after 1/1/13 will be increased by $200.

Venue: The venue for the meeting is the Marriott City Center, Salt Lake City, Utah. Please either call the hotel at +1-866-961-8700 (toll free) and mention the group code "sciscia" or book online here. Please note that we need attendees to use this hotel in order not to incur additional charges for use of the conference rooms and keep registration fees low. The group rate is $149/night + tax.

Meeting Rooms: See here for the web version.

Agenda

Time Monday, January 7 Tuesday, January 8 Wednesday, January 9 Thursday, January 10 Friday, January 11
Project Activities
(Capitol BC) 		Project Activities
(Capitol BC) 		Project Activities
(Capitol BC) 		AHM
(Capitol ABC), EAB
Project Activities 		Project Activities
(Capitol BC)
7:30-8:00 Breakfast
(Olympus A) 		Breakfast
(Olympus A) 		Breakfast
(Olympus A) 		Breakfast
(Olympus A)
8:00-10:00
9-10am: Breakout Session: Performance Evaluation Tools
(Capitol B)
Breakout: Agile Robotics
(Amethyst)
Breakout: Agile Robotics
(Amethyst) 		8-8:05am: Welcome (Ron Kikinis)

8:05-9:15am: Algorithms Core: Update and Future Plans
9:20-9:55am: Recent Developments on Quantitative Multimodal Imaging at Fraunhofer MEVIS. Invited Speaker: Horst Hahn, PhD.

 Project Presentations
(Capitol BC)
10:00-10:30 Coffee
(General area) 		Coffee
(General area) 		Coffee
(General area) 		Coffee
(General area)
10:30-12:00
Breakout Session: Image Guided Therapy
(Amethyst)
Breakout: Agile Robotics
(Capitol A) 		NA-MIC competitive renewal.
Closed session for TRD PIs and core personnel
(Amethyst) 		DBP Update and Future Plans
10:30-10:55am: TBI (Jack Van Horn)
10:55-11:20am: Atrial Fibrillation (Rob McLeod)
11:20-11:45am: Huntington's Disease (Hans Johnson)
11:45-12:10pm: Head and Neck Cancer (Greg Sharp, Slides)
12:00-1:00 Lunch
(Olympus A) 		Lunch
(Olympus A)
Lunch
(Olympus A)
 Lunch
(Olympus A) 		Boxed Lunch and Adjourn
(Olympus A)
1:00-3:00 Project Presentations
(Capitol BC)
Breakout: Agile Robotics
(Capitol A) 		DBP Team Meetings
(Capitol A)
1-2pm: DBP MGH Head and Neck Cancer
2-3pm: DBP Utah Atrial Fibrillation 		1:15-2pm: Engineering Core: Updates and Future Plans
2-2:30pm Extensions
2:30-3:00pm: Outreach (Sonia Pujol, Steve Pieper)
3:00-3:30 Coffee
(General area) 		Coffee
(General area) 		Coffee
(General area) 		Coffee
(General area)
3:00-5:00 Breakout: Slicer Extensions for Developers
(Capitol BC)
Breakout: PyXNAT
(Capitol A)
Breakout: Agile Robotics
(Amethyst) 		3-4pm: Breakout Session: Real World DICOM
(Capitol B)
4-5pm: Simple ITK Tutorial
Breakout: Agile Robotics
(Capitol A) 		DBP Team Meetings
(Capitol A)
3-4pm: DBP UCLA Traumatic Brain Injury
4-5pm: DBP Iowa Huntington's Disease 		3-4pm: EAB meeting (Core, Site, and DBP PIs to join)
(Amethyst)
4-5pm: EAB closed session
(Amethyst)
05:00-07:00 6:00 Optional: Beer at Murphy's (like last year)

General Announcements:

    • Will be added here

Registered Attendees

NOTE: The registered attendee list will be posted here by the organizers. DO NOT add your name to this list yourself. To register, please click here.

As of 9:30 AM 1/2/2013

  1. Ackerman , Michael , National Library of Medicine, NIH, OHPCC
  2. Aucoin , Nicole , BWH
  3. Aylward , Stephen , Kitware, Inc.
  4. Batmanghelich , Kayhan , MIT
  5. Bengali , Salma , SCI Institute
  6. Blumenfeld , Morry , EAB
  7. Budin , Francois , UNC
  8. Cates , Joshua , SCI Institute
  9. Cavelier , German , NIH-NIMH
  10. Cevidanes , Lucia , University of Michigan
  11. Chauvin , Laurent , Brigham and Womens Hospital
  12. Dalca , Adrian , MIT
  13. Datar , Manasi , SCI Institute
  14. Fedorov , Andriy , Harvard Medical School
  15. Fillion-Robin , Jean-Christophe , Kitware Inc.
  16. Finet , Julien , Kitware Inc.
  17. Fishbaugh , James , SCI Institute
  18. Gao , Yi , BWH
  19. Gardner , Greg , SCI Institute
  20. Gerig , Guido , SCI Institute
  21. Grethe , Jeffrey , University of California, San Diego
  22. Haehn , Daniel , Boston Childrens Hospital
  23. Hata , Noby , BWH
  24. Ibanez , Luis , KITWARE Inc.
  25. Iftekahruddin , Khan , Old Dominion University
  26. Irimia , Andrei , University of California, Los Angeles
  27. Johnson , Chris , EAB
  28. Johnson , Hans , The University of Iowa
  29. Kaiser , Adrien , UNC
  30. Kapur , Tina , Harvard Medical School
  31. Karasev , Peter , Univ of Alabama at Birmingham
  32. Kato , Takahisa , Brigham and womens hospital
  33. Kikinis , Ron , SPL, BWH
  34. Kochis , Donna , Kitware
  35. Kolesov , Ivan , Univ of Alabama at Birmingham
  36. Kumar , Sunil , Washington University in St. Louis
  37. Kumekawa , Miki , Brigham Womens Hospital Chiba University
  38. Li , Rui , GE Global Research
  39. Little , David , University of California, San Diego
  40. Lorensen , Bill , EAB
  41. Lowekamp , Bradley ,
  42. MacLeod , Rob , SCI Institute
  43. McCormick , Matthew , Kitware, Inc
  44. Mehrtash , Alireza , Brigham and Womens Hospital
  45. Miller , Jim , GE Global Research
  46. Morris , Alan , SCI Institute
  47. Napel , Sandy , EAB
  48. Onuma , Kazufumi , CANON INC.
  49. Padfield , Dirk , GE Global Research
  50. Paniagua , Beatriz , University of North Carolina at Chapel Hill
  51. Pieper , Steve , Isomics, Inc.
  52. Pinter , Csaba , Queens University
  53. Pujol , Sonia , Brigham and Womens Hospital, Harvard Medical School
  54. Rankin , Adam , Queens University
  55. Ross , James , Brigham and Womens Hospital
  56. San Jose , Raul , Brigham and Womens Hospital
  57. Sharma , Anuja , SCI Institute
  58. Sharp , Gregory , MGH
  59. Shen , Dinggang , UNC-Chapel Hill
  60. Shusharina , Nadya , MGH
  61. Sridharan , Ramesh , MIT
  62. Styner , Martin , University of North Carolina
  63. Tannenbaum , Allen , Univ of Alabama at Birmingham
  64. Toews , Matthew , BWH, Harvard Medical School
  65. Tokuda , Junichi , Brigham and Womens Hospital
  66. Ungi , Tamas , Queens University
  67. Van Horn , John , University of California Los Angeles
  68. Veeraraghavan , Harini , Memorial Sloan-Kettering Cancer Center
  69. Veni , Gopalkrishna , SCI Institute
  70. Wang , Bo , SCI Institute
  71. Wang , Kevin , Princess Margaret Hospital
  72. Wassermann , Demian , Brigham and Womens Hospital
  73. Welch , David , The University of Iowa
  74. Wells , William , Brigham and Womens Hospital, HMS
  75. Whitaker , Ross , SCI Institute
  76. Yamada , Atsushi , Brigham and Womens Hospital
  77. Yarmarkovich , Alexander , ISOMIC
  78. Yoo , Terry , National Library of Medicine, NIH, OHPCC
  79. Zhu , Liangjia , Univ of Alabama at Birmingham
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