Difference between revisions of "AlgorithmRetreat2010"

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** Yi Gao, region competition segmentation, particle diffeo/polyaffine registrations
 
** Yi Gao, region competition segmentation, particle diffeo/polyaffine registrations
 
** Sam Gerber, brain image manifolds
 
** Sam Gerber, brain image manifolds
** Romeil Sandhu, diffeo registration of 3D objects
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** Romeil Sandhu, filtered non-rigid registration
 
** Michal Depa
 
** Michal Depa
 
** Archana Venkataraman
 
** Archana Venkataraman
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** Marc Niethammer
 
** Marc Niethammer
 
* 1-5 Discussions on longitudinal & personalized registration, segmentation topics, shape topics
 
* 1-5 Discussions on longitudinal & personalized registration, segmentation topics, shape topics
 
  
 
===Saturday===
 
===Saturday===

Revision as of 18:14, 5 November 2010

Home < AlgorithmRetreat2010
Back to brainstorming page
Back to events page

Nov 5-6, Chapel Hill, NC

Introduction

  • The NA-MIC algorithm core holds an annual retreat
  • The 2010 event will begin on 8:30 am on Friday the 5th of Nov and finish at approximately 2pm on Saturday the 6th.
  • Meeting location: SittersonHall/Brooks Building, chair's conference room, FB120 (first floor)
  • If you have problems finding it, give Martin a call (919-260-6674)

Map

Agenda

Friday

  • 8:30 meet in Chair's conference room, Brooks Building, coffee
  • 9-10 DBP updates, data availability, each 15 minutes
  • 10-10:30 DBP common themes, differences, what is missing
  • 10:30-12 Overview of Core 1 site short and long term plans (each 15 min)
  • noon lunch
  • student presentations of exciting ideas, 10-20 minutes
    • Yi Gao, region competition segmentation, particle diffeo/polyaffine registrations
    • Sam Gerber, brain image manifolds
    • Romeil Sandhu, filtered non-rigid registration
    • Michal Depa
    • Archana Venkataraman
    • Ross Whitaker
    • Martin Styner
    • Marc Niethammer
  • 1-5 Discussions on longitudinal & personalized registration, segmentation topics, shape topics

Saturday

  • 8:30 meet & coffee, meeting first in front of Sitterson Hall (doors are closed on Saturday)
  • 9-11 Slicer
  1. If your algorithm can be delivered as a CLI, then develop and deploy it now as an extension for 3.6 and the nightly builds. This will transition smoothly to slicer4.
  2. If your algorithm requires interactivity then
    1. If you want to deploy it within the next 6 months, then consider a python or tcl scripted wizard interface to CLI code, knowing that there will be some porting required.
    2. if a wizard isn't interactive enough, consider a custom kwwidgets interface, knowing that this will be difficult to port to slicer4
  3. if your deployment target is 6 or more months out, you should begin working with the slicer4 Qt developer build starting in January.
    • Discussion on interactive issues, what level of interaction, how to mesh those with Slicer
  • 11-12 AHM planning
  • noon lunch on Franklin street
  • 1-2 summary, make up slot

Topics

  • Plans, Needs, Expectations of and Interactions with DBPs (Core-1 contacts, all)
    • Actions items for the AHM
    • Plans for the next 12 months
  • Segmentation
  • Registration
  • Other algorithm classes
    • Shape
    • Interactive algorithms
  • Interaction with the Engineering Core
    • See whitepaper about the interactions between Cores 1a, 1b, and 2.
  • Suggested activities for Jan 2011 Project Week

Suggested Hotels

Nice for walking to campus & Franklin Street, but rather expensive (ask for the University/Computer Science rate of 159 USD per night):

Best suggestions (need taxi or rental car to campus & Franklin Street):

Attendees

  • Ross Whitaker, Utah
  • Guido Gerig, Utah
  • Polina Golland, MIT
  • Allen Tannenbaum, Georgia Tech
  • Martin Styner, UNC
  • Ipek Oguz, UNC
  • Marc Niethammer, UNC
  • Ron Kikinis (Saturday only)
  • Michal Depa, MIT
  • Archana Venkataraman, MIT
  • Sam Gerber, Utah
  • Marcel Prastawa, Utah
  • Yi Gao, Georgia Tech
  • Romeil Sandhu, Georgia Tech