CCA:AtlasTools:LabelPage:Sample
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Title
NAC CCA Core 2010 MRI Brain Atlas
Description
This file contains the label information that corresponds to the 2010 SPL Brain Atlas.
Credits
- Author
- Ion-Florin Talos MD
- Michael Halle PhD
- Institution
- Center for Computational Anatomy Core
- Neuroimage Analysis Center
- Surgical Planning Lab
- Brigham and Women's Hospital
- Grants
- National Institutes of Health (NIH)'s National Center for Research Resources (NCRR), NIH P41 RR13218.
- Creation Date
- 02/16/2009
Imports
Links to other labeltag pages go here. The contents of those pages are imported before the data described on this page.
Lookup table information
These tables are just mediawiki tables with a couple of css classes included to make them sortable and declare them as Label Pages.
Generally, the workflow for Label Pages is to import an initial (and possibly large) table using a bulk data converter (say, from a CSV file), then make small edits through the wiki. The label tables can be broken up into smaller tables to make it easier to browse and edit them.
Atlas lookup table
| integer_label | text_label | color | notes |
|---|---|---|---|
| 2 | white matter of left cerebral hemisphere | rgb(245,245,245) | |
| 4 | left lateral ventricle | rgb(120,18,134) | |
| 5 | temporal horn of left lateral ventricle | rgb(196,58,250) | |
| 7 | white matter of cerebellum left | rgb(220,248,164) | |
| 8 | left cerebellar cortex | rgb(230,148,34) | |
| 10 | left thalamus | rgb(0,118,14) | |
| 11 | left caudate nucleus | rgb(122,186,220) | |
| 12 | left putamen | rgb(236,13,176) | |
| 13 | left globus pallidus pars externa | rgb(12,48,255) | |
| 14 | wall of third ventricle | rgb(204,182,142) | |
| 15 | fourth ventricle | rgb(42,204,164) | |
| 17 | left hippocampus | rgb(220,216,20) | |
| 18 | left amygdala | rgb(103,255,255) | |
| 24 | third ventricle (1) | rgb(60,60,60) | |
| 25 | left globus pallidus pars interna | rgb(255,165,0) | |
| 26 | left nucleus accumbens | rgb(165,0,255) | |
| 27 | left middle cerebellar peduncle | rgb(0,255,127) | |
| 28 | left hypothalamus | rgb(165,42,42) | |
| 34 | left superior cerebellar peduncle | rgb(122,135,50) | |
| 35 | pons | rgb(51,50,135) | |
| 40 | midbrain | rgb(205,62,78) | |
| 41 | white matter of right cerebral hemisphere | rgb(0,225,0) | |
| 43 | right lateral ventricle | rgb(120,18,134) | |
| 44 | temporal horn of right lateral ventricle | rgb(196,58,250) | |
| 46 | white matter of cerebellum right | rgb(220,248,164) | |
| 47 | right cerebellar cortex | rgb(230,148,34) | |
| 49 | right thalamus | rgb(0,118,14) | |
| 50 | right caudate nucleus | rgb(122,186,220) | |
| 51 | right putamen | rgb(236,13,176) | |
| 52 | right globus pallidus pars externa | rgb(13,48,255) | |
| 53 | right hippocampus | rgb(220,216,20) | |
| 54 | right amygdala | rgb(103,255,255) | |
| 55 | right insula | rgb(80,196,98) | |
| 58 | right nucleus accumbens | rgb(255,165,0) | |
| 60 | right hypothalamus | rgb(165,42,42) | |
| 61 | medulla oblongata | rgb(135,206,235) | |
| 63 | choroid plexus of right lateral ventricle | rgb(0,200,221) | |
| 66 | left substantia nigra | rgb(122,135,50) | |
| 71 | right substantia nigra | rgb(122,135,50) | |
| 72 | pineal body | rgb(120,190,150) | |
| 78 | left optic tract | rgb(255,148,10) | |
| 79 | left red nucleus | rgb(255,148,10) | |
| 84 | right red nucleus | rgb(255,218,185) | |
| 85 | optic chiasm | rgb(234,169,30) | |
| 96 | pellucid septum | rgb(205,10,125) | |
| 100 | left mammillothalamic tract | rgb(124,140,178) | |
| 142 | anterior commissure | rgb(221,226,68) | |
| 200 | right mammillothalamic tract | rgb(0,50,128) | |
| 216 | right optic tract | rgb(255,204,102) | |
| 1000 | left insula | rgb(25,5,25) | |
| 1001 | left superior temporal gyrus (1) | rgb(25,100,40) | |
| 1002 | left cingulate gyrus (1) | rgb(125,100,160) | |
| 1003 | left middle frontal gyrus (1) | rgb(100,25,0) | |
| 1005 | left cuneus | rgb(220,20,100) | |
| 1006 | left ambiens gyrus | rgb(220,20,10) | |
| 1007 | left fusiform gyrus | rgb(180,220,140) | |
| 1008 | left inferior parietal lobule | rgb(220,60,220) | |
| 1009 | left inferior temporal gyrus | rgb(180,40,120) | |
| 1010 | left cingulate gyrus (2) | rgb(140,20,140) | |
| 1011 | left lateral occipital gyrus | rgb(20,30,140) | |
| 1012 | left orbital gyri | rgb(35,75,50) | |
| 1013 | left lingual gyrus | rgb(225,140,140) | |
| 1014 | left straight gyrus | rgb(200,35,75) | |
| 1015 | left middle temporal gyrus | rgb(160,100,50) | |
| 1017 | left paracentral lobule | rgb(20,220,60) | |
| 1018 | opercular part of left inferior frontal gyrus | rgb(60,220,60) | |
| 1019 | orbital part of left inferior frontal gyrus | rgb(220,180,140) | |
| 1020 | triangular part of left inferior frontal gyrus | rgb(220,60,20) | |
| 1021 | left visual cortex | rgb(120,100,60) | |
| 1022 | left postcentral gyrus | rgb(220,20,20) | |
| 1023 | left cingulate gyrus (1) | rgb(220,180,220) | |
| 1024 | left precentral gyrus | rgb(60,20,220) | |
| 1025 | left precuneus | rgb(160,140,180) | |
| 1026 | left cingulate gyrus (3) | rgb(80,20,140) | |
| 1027 | left middle frontal gyrus (2) | rgb(75,50,125) | |
| 1028 | left superior frontal gyrus (1) | rgb(20,220,160) | |
| 1029 | left superior parietal lobule and precuneus | rgb(20,180,140) | |
| 1030 | left superior temporal gyrus | rgb(140,220,220) | |
| 1031 | left angular and supramarginal gyrus | rgb(80,160,20) | |
| 1032 | left frontal pole | rgb(100,0,100) | |
| 1033 | left temporal pole | rgb(70,70,70) | |
| 1034 | left transverse temporal gyri | rgb(150,150,200) | |
| 2001 | right superior temporal gyrus (2) | rgb(25,100,40) | |
| 2003 | right middle frontal gyrus (1) | rgb(100,25,0) | |
| 2005 | right cuneus | rgb(220,20,100) | |
| 2006 | right parahippocampal gyrus | rgb(220,20,10) | |
| 2007 | right fusiform gyrus | rgb(180,220,140) | |
| 2008 | right angular and supramarginal gyri | rgb(220,60,220) | |
| 2009 | right inferior temporal gyrus | rgb(180,40,120) | |
| 2010 | right cingulate gyrus (2) | rgb(140,20,140) | |
| 2011 | right lateral occipital gyrus | rgb(20,30,140) | |
| 2012 | right orbital gyri (1) | rgb(35,75,50) | |
| 2013 | right lingual gyrus | rgb(225,140,140) | |
| 2014 | right straight gyrus | rgb(200,35,75) | |
| 2015 | right middle temporal gyrus | rgb(160,100,50) | |
| 2017 | right paracentral lobule | rgb(60,220,60) | |
| 2018 | opercular part of right inferior frontal gyrus | rgb(220,180,140) | |
| 2019 | orbital part of right inferior frontal gyrus | rgb(20,100,50) | |
| 2020 | triangular part of right inferior frontal gyrus | rgb(220,60,20) | |
| 2021 | right visual cortex | rgb(120,100,60) | |
| 2022 | right postcentral gyrus | rgb(220,20,20) | |
| 2023 | right cingulate gyrus (1) | rgb(220,180,220) | |
| 2024 | right precentral gyrus | rgb(60,20,220) | |
| 2025 | right precuneus | rgb(160,140,180) | |
| 2027 | right middle frontal gyrus (1) | rgb(75,50,125) | |
| 2028 | right superior frontal gyrus | rgb(20,220,160) | |
| 2029 | right superior parietal lobule | rgb(20,180,140) | |
| 2030 | right superior temporal gyrus (3) | rgb(140,220,220) | |
| 2031 | right supramarginal gyrus | rgb(80,160,20) | |
| 2032 | right frontal pole | rgb(100,0,100) | |
| 2033 | right temporal pole | rgb(70,70,70) | |
| 2108 | right angular and supramarginal gyri | rgb(230,250,230) | |
| 3000 | right claustrum | rgb(230,250,230) | |
| 3001 | left claustrum | rgb(230,155,215) | |
| 3002 | right mamillary body | rgb(130,155,95) | |
| 3003 | left mamillary body | rgb(155,230,255) | |
| 3004 | corpus callosum | rgb(135,185,205) | |
| 3005 | right fornix of forebrain | rgb(35,235,155) | |
| 3007 | left fornix of forebrain | rgb(75,35,115) | |
| 3008 | infundibulum of neurohypophysis | rgb(35,195,35) | |
| 3011 | adenohypophysis | rgb(235,225,115) | |
| 3012 | neurohypophysis | rgb(220,180,205) |
Small addon table
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | background | rgb(0,0,0) | The background value is stored here because it isn't anatomical. |
| 10000 | bounding box | rgb(255, 128, 128) | This is just a made-up label. |
| 10001 | selection | rgb(255, 255, 255) | Also made up. |
Output color file
An external script processes this page and produces the following color file, suitable for Slicer.
Pages suitable for generating Slicer color files should be marked with the Category "LabelPageSlicerColorFile".
TODO: Generate this file automatically as part of wiki editing.
#WARNING: This file is automatically generated. #WARNING: Any edits made to this file may be overwritten. # #Filename: CCA_AtlasTools_LabelPage_Sample.txt #Title: CCA:AtlasTools:LabelPage:Sample #PageName: CCA:AtlasTools:LabelPage:Sample #Source: http://www.na-mic.org/Wiki/index.php/CCA:AtlasTools:LabelPage:Sample # #Imported page URLs: # 0: http://www.na-mic.org/Wiki/index.php/CCA:AtlasTools:LabelPage:SampleExternal # 1: http://www.na-mic.org/Wiki/index.php/CCA:AtlasTools:LabelPage:SampleExternal2 # #Begin table data: 0 background 0 0 0 255 2 white_matter_of_left_cerebral_hemisphere 245 245 245 255 4 left_lateral_ventricle 120 18 134 255 5 temporal_horn_of_left_lateral_ventricle 196 58 250 255 7 white_matter_of_cerebellum_left 220 248 164 255 8 left_cerebellar_cortex 230 148 34 255 10 left_thalamus 0 118 14 255 11 left_caudate_nucleus 122 186 220 255 12 left_putamen 236 13 176 255 13 left_globus_pallidus_pars_externa 12 48 255 255 14 wall_of_third_ventricle 204 182 142 255 15 fourth_ventricle 42 204 164 255 17 left_hippocampus 220 216 20 255 18 left_amygdala 103 255 255 255 24 third_ventricle_(1) 60 60 60 255 25 left_globus_pallidus_pars_interna 255 165 0 255 26 left_nucleus_accumbens 165 0 255 255 27 left_middle_cerebellar_peduncle 0 255 127 255 28 left_hypothalamus 165 42 42 255 34 left_superior_cerebellar_peduncle 122 135 50 255 35 pons 51 50 135 255 40 midbrain 205 62 78 255 41 white_matter_of_right_cerebral_hemisphere 0 225 0 255 43 right_lateral_ventricle 120 18 134 255 44 temporal_horn_of_right_lateral_ventricle 196 58 250 255 46 white_matter_of_cerebellum_right 220 248 164 255 47 right_cerebellar_cortex 230 148 34 255 49 right_thalamus 0 118 14 255 50 right_caudate_nucleus 122 186 220 255 51 right_putamen 236 13 176 255 52 right_globus_pallidus_pars_externa 13 48 255 255 53 right_hippocampus 220 216 20 255 54 right_amygdala 103 255 255 255 55 right_insula 80 196 98 255 58 right_nucleus_accumbens 255 165 0 255 60 right_hypothalamus 165 42 42 255 61 medulla_oblongata 135 206 235 255 63 choroid_plexus_of_right_lateral_ventricle 0 200 221 255 66 left_substantia_nigra 122 135 50 255 71 right_substantia_nigra 122 135 50 255 72 pineal_body 120 190 150 255 78 left_optic_tract 255 148 10 255 79 left_red_nucleus 255 148 10 255 84 right_red_nucleus 255 218 185 255 85 optic_chiasm 234 169 30 255 96 pellucid_septum 205 10 125 255 100 left_mammillothalamic_tract 124 140 178 255 142 anterior_commissure 221 226 68 255 200 right_mammillothalamic_tract 0 50 128 255 216 right_optic_tract 255 204 102 255 1000 left_insula 25 5 25 255 1001 left_superior_temporal_gyrus_(1) 25 100 40 255 1002 left_cingulate_gyrus_(1) 125 100 160 255 1003 left_middle_frontal_gyrus_(1) 100 25 0 255 1005 left_cuneus 220 20 100 255 1006 left_ambiens_gyrus 220 20 10 255 1007 left_fusiform_gyrus 180 220 140 255 1008 left_inferior_parietal_lobule 220 60 220 255 1009 left_inferior_temporal_gyrus 180 40 120 255 1010 left_cingulate_gyrus_(2) 140 20 140 255 1011 left_lateral_occipital_gyrus 20 30 140 255 1012 left_orbital_gyri 35 75 50 255 1013 left_lingual_gyrus 225 140 140 255 1014 left_straight_gyrus 200 35 75 255 1015 left_middle_temporal_gyrus 160 100 50 255 1017 left_paracentral_lobule 20 220 60 255 1018 opercular_part_of_left_inferior_frontal_gyrus 60 220 60 255 1019 orbital_part_of_left_inferior_frontal_gyrus 220 180 140 255 1020 triangular_part_of_left_inferior_frontal_gyrus 220 60 20 255 1021 left_visual_cortex 120 100 60 255 1022 left_postcentral_gyrus 220 20 20 255 1023 left_cingulate_gyrus_(1) 220 180 220 255 1024 left_precentral_gyrus 60 20 220 255 1025 left_precuneus 160 140 180 255 1026 left_cingulate_gyrus_(3) 80 20 140 255 1027 left_middle_frontal_gyrus_(2) 75 50 125 255 1028 left_superior_frontal_gyrus_(1) 20 220 160 255 1029 left_superior_parietal_lobule_and_precuneus 20 180 140 255 1030 left_superior_temporal_gyrus 140 220 220 255 1031 left_angular_and_supramarginal_gyrus 80 160 20 255 1032 left_frontal_pole 100 0 100 255 1033 left_temporal_pole 70 70 70 255 1034 left_transverse_temporal_gyri 150 150 200 255 2001 right_superior_temporal_gyrus_(2) 25 100 40 255 2003 right_middle_frontal_gyrus_(1) 100 25 0 255 2005 right_cuneus 220 20 100 255 2006 right_parahippocampal_gyrus 220 20 10 255 2007 right_fusiform_gyrus 180 220 140 255 2008 right_angular_and_supramarginal_gyri 220 60 220 255 2009 right_inferior_temporal_gyrus 180 40 120 255 2010 right_cingulate_gyrus_(2) 140 20 140 255 2011 right_lateral_occipital_gyrus 20 30 140 255 2012 right_orbital_gyri_(1) 35 75 50 255 2013 right_lingual_gyrus 225 140 140 255 2014 right_straight_gyrus 200 35 75 255 2015 right_middle_temporal_gyrus 160 100 50 255 2017 right_paracentral_lobule 60 220 60 255 2018 opercular_part_of_right_inferior_frontal_gyrus 220 180 140 255 2019 orbital_part_of_right_inferior_frontal_gyrus 20 100 50 255 2020 triangular_part_of_right_inferior_frontal_gyrus 220 60 20 255 2021 right_visual_cortex 120 100 60 255 2022 right_postcentral_gyrus 220 20 20 255 2023 right_cingulate_gyrus_(1) 220 180 220 255 2024 right_precentral_gyrus 60 20 220 255 2025 right_precuneus 160 140 180 255 2027 right_middle_frontal_gyrus_(1) 75 50 125 255 2028 right_superior_frontal_gyrus 20 220 160 255 2029 right_superior_parietal_lobule 20 180 140 255 2030 right_superior_temporal_gyrus_(3) 140 220 220 255 2031 right_supramarginal_gyrus 80 160 20 255 2032 right_frontal_pole 100 0 100 255 2033 right_temporal_pole 70 70 70 255 2108 right_angular_and_supramarginal_gyri 230 250 230 255 3000 right_claustrum 230 250 230 255 3001 left_claustrum 230 155 215 255 3002 right_mamillary_body 130 155 95 255 3003 left_mamillary_body 155 230 255 255 3004 corpus_callosum 135 185 205 255 3005 right_fornix_of_forebrain 35 235 155 255 3007 left_fornix_of_forebrain 75 35 115 255 3008 infundibulum_of_neurohypophysis 35 195 35 255 3011 adenohypophysis 235 225 115 255 3012 neurohypophysis 220 180 205 255 15000 test_label_15000 0 0 5 255 15001 test_label_15001 255 255 5 255 50000 test_label_50000 0 0 5 255 50001 test_label_50001 255 255 5 255 #EOF
