Difference between revisions of "CMF Workshop Cleveland 2014"

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*1:00 – 2:00pm
 
*1:00 – 2:00pm
  
- General presentation of the different '''open source dental tools''' (power point) – ''Lucia Cevidanes''
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- General presentation of the different '''open source dental tools''' [[File:ClevelandPresentation.pdf]] – ''Lucia Cevidanes''
  
 
- Presentation '''EasyClip''' – ''Julia Lopinto''
 
- Presentation '''EasyClip''' – ''Julia Lopinto''
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*2:00 – 3:00pm
 
*2:00 – 3:00pm
Dicom files - They are different from the gipl files – ''Lucia Cevidanes''
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- Dicom files - They are different from the gipl files – ''Lucia Cevidanes''
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----
 
----
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*3:00 – 3:30pm
 
*3:00 – 3:30pm
Gipl files – "Antonio Ruella"
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- Gipl files – ''Antonio Ruella''
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----
 
----
 +
 
*3:30 – 4:00pm
 
*3:30 – 4:00pm
Scan already approximated – "Antonio Ruella"
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- Scan already approximated – ''Antonio Ruella''
 +
 
 
----
 
----
 +
 
*4:00 – 4:30pm
 
*4:00 – 4:30pm
CB segmentation – "Antonio Ruella"
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- CB segmentation – ''Antonio Ruella''
 +
 
 
----
 
----
 +
 
*4:30 – 5:00pm
 
*4:30 – 5:00pm
CB registration – "Antonio Ruella"
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- CB registration – ''Antonio Ruella''
  
 
==Presenters==
 
==Presenters==
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==Software==
 
==Software==
[http://www.na-mic.org/Wiki/images/e/e8/Data_ITKsnap.zip ITKsnap segmentation]
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[https://na-mic.org/w/images/e/e8/Data_ITKsnap.zip ITKsnap segmentation]
  
[http://www.na-mic.org/Wiki/images/4/47/Data_Slicer3.zip Slicer4 visualization]
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[https://na-mic.org/w/images/4/47/Data_Slicer3.zip Slicer4 visualization]
  
 
==Data==
 
==Data==
Folder 1: Dicom files - They are different from the gipl files
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[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEV0M4eWJEeUhrb3c&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 1: Dicom files - They are different from the gipl files]
 
 
Folder 2: gipl files
 
 
 
Folder 3: Scan already approximated
 
  
Folder 4: CB segmentation
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[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEQWJzN29BMnR2WW8&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 2: gipl files]
  
Folder 5: CB registration
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[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEYWE4QWRXUk5JNjg&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 3: Scan already approximated]
  
Folder 5a: segm Max and MD T1
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[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEOEVFWmVRUVpRQWM&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 4: CB segmentation]
  
Folder 6: Models - CB registration
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[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESi1pQzVkQWFFckk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5: CB registration]
  
==Extension==
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[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESUNRVERaY0JnXzQ&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5a: segm Max and MD T1]
ShapePopulationViewer
 
  
ModelToModelDistance
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[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEWEp3ZWhkYTU4MVk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 6: Models - CB registration]
  
IntensitySegmenter
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[https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools]
 
 
[http://www.slicer.org/slicerWiki/images/c/c1/CMFregData.zip CMFreg registration]
 
  
 
==Other Resources==
 
==Other Resources==
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[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed]
 
[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed]
  
[http://www.slicer.org/slicerWiki/index.php/Main_Page Slicer user orientation]
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[https://www.slicer.org/wiki/Main_Page Slicer user orientation]
 +
 
 +
[https://www.slicer.org/wiki/Documentation/4.3/Training Slicer tutorials]
  
[http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Training Slicer tutorials]
+
==Participant List==
 +
#Toni Magni
 +
#Vicente Hernandez-Soler
 +
#Anwar Alhazmi
 +
#Bo Amornporncharoen
 +
#Michael Mouroulanos
 +
#Ipsit Patra
 +
#Pritesh Parmar
 +
#Domenico Dalessandri
 +
#Alex Vo
 +
#Manuel Lagravere
 +
#Nicholas Dietrich
 +
#Ahmed Ghoneima
 +
#Mohamed Bazina

Latest revision as of 18:27, 10 July 2017

Home < CMF Workshop Cleveland 2014
NAMIC.jpg CWRU.png MU.jpg UNC uni.jpg

Pre- Joint Cephalometric Experts Imaging Hands-on Workshop

Introduction

This workshop will highlight new developments in publicly available software for image analysis and imaging based research for Dental applications. 3D image analysis continue to mandate a multidisciplinary collaborative team including clinician researchers, software engineers and computer science experts. This hands-on workshop for Cranio Maxillo Facial applications will be held prior to the Joint Cephalometric Experts Group at the Bolton Brush Growth Study Center, Cleveland, OH. This work was supported by the National Institute Of Dental & Craniofacial Research of the National Institutes of Health under Award Number R01DE024450. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health

Date and Location

Wednesday November 5th , 1:00-­‐5:00 pm, at the Case Western Reserve University School of Dental Medicine.

Workshop Content

  • 1:00 – 2:00pm

- General presentation of the different open source dental tools File:ClevelandPresentation.pdfLucia Cevidanes

- Presentation EasyClipJulia Lopinto

- Presentation Angle MeasurementJulia Lopinto

- Presentation Pick'nPaintLucie Macron

- Installation of software: ITK-SNAP (version 2.4) and Slicer-4.3.1

Problems for the installation of Slicer because a new version was just upload on the website and with this version the extension presented during the workshop can’t be installed.


The different presentations started with a presentation and a demonstration of the use of the tool The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.

  • 2:00 – 3:00pm

- Dicom files - They are different from the gipl files – Lucia Cevidanes


  • 3:00 – 3:30pm

- Gipl files – Antonio Ruella


  • 3:30 – 4:00pm

- Scan already approximated – Antonio Ruella


  • 4:00 – 4:30pm

- CB segmentation – Antonio Ruella


  • 4:30 – 5:00pm

- CB registration – Antonio Ruella

Presenters

  • Lucia Cevidanes , Ph.D, DDS, University of Michigan

luciacev@umich.edu

  • Antonio Ruella, Ph.D, DDS, MS, University of Michigan

antonioruellas@yahoo.com.br

  • Marcelo Gomes, DDS, MS, University of Michigan

marceloregisgomes@hotmail.com

  • Liliane Gomes, DDS, MS, PhD student, University of Michigan

lilianerosas@hotmail.com

  • Marilia Yatabe, DDS, MS, PhD student, University of Michigan

msyatabe@umich.edu

  • Lucie Macron, Computer Programmer intern, University of Michigan

luciemac@umich.edu

  • Julia Lopinto, Computer Programmer intern, University of Michigan

jlop@umich.edu

Preparation for the workshop

The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory is required. Shared memory graphics boards have significantly poorer performance.

Software

ITKsnap segmentation

Slicer4 visualization

Data

Folder 1: Dicom files - They are different from the gipl files

Folder 2: gipl files

Folder 3: Scan already approximated

Folder 4: CB segmentation

Folder 5: CB registration

Folder 5a: segm Max and MD T1

Folder 6: Models - CB registration

DCBIA Videos - Tutorial videos for the image analysis tools

Other Resources

Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)

SPHARM-PDM publications in PubMed

Slicer user orientation

Slicer tutorials

Participant List

  1. Toni Magni
  2. Vicente Hernandez-Soler
  3. Anwar Alhazmi
  4. Bo Amornporncharoen
  5. Michael Mouroulanos
  6. Ipsit Patra
  7. Pritesh Parmar
  8. Domenico Dalessandri
  9. Alex Vo
  10. Manuel Lagravere
  11. Nicholas Dietrich
  12. Ahmed Ghoneima
  13. Mohamed Bazina