CTSC:ARRA.011210

Back to CTSC:ARRA supplement

Agenda

1. i2b2 to XNAT to DICOM workflow

Harvard Catalyst Medical Informatics group Meeting Minutes January 12, 2010

In attendance:

• Valerie Humblet
• Mike Mendis
• Shawn Murphy
• Bill Tellier
• Mark Anderson
• Randy Gollub
• Yong Gao
• Paul Lamonica
• Steve Piper
• Wendy Plesniak
• Alex Zeitsev

Discussion

Project components

• the software development part.
• the department engagement (Randy is working on setting up meetings with the different institutions to work on policy issues).
• the studies: we need the science, it is essential to get a couple of publications to validate the project.

i2b2 to XNAT to DICOM architecture

• In the picture above, it is clear now that (*) will be an intermediary to the PACS and XNAT. i2b2 will not communicate directly with the PACS. Anything build in i2b2 will communicate with (*) and then (*) will communicate with the PACS.
• i2b2 structure is made with projects and users. Every message from i2b2 always includes who the user is and information about the project (IRB etc). We have to understand how to coordinate the user/project structure from i2b2 in XNAT. Randy mentioned that Dan Marcus has just been asked to support communication between i2b2 and XNAT.
• (*) will need to be able to log into XNAT and send the images to the right place. The most difficult part will probably to send back the new data from XNAT to i2b2.
• patient: in i2b2 there is a structure to ensure that the access tho the HIPAA data is limited. There is a data management cell in i2b2 to deal with the medical record number (MRN). (*) will need the MRN to retrieve data.
• How is XNAT prepared to deal with MRN? According to Yong, XNAT does not allow you to stock any HIPAA controlled data.
• Each project will be formed around an IRB, then around a set of patients, then a set of users allowed to use the data associated with the project.

i2b2 to XNAT to DICOM worflow

• Request is made from i2b2 client to look up:
  • By accession number: What are the nature of accessions for "studies" and "images" at the 4 sites
  • By patient: Assumed to always be and MRN
  • i2b2 enforce that the PI is asking only for the studies he is allowed to see.
  • As we discussed last week, the access. # is mapped to the UID (very internal, one per image, they are part of the DICOM).

• A navigational client experience is made to identify a study or an image:
  • How can we give access to only a couple of studies and not the whole PACS: the (*) will serve as a gatekeeper and the throttle to let know that one can not access everything (ex: images from the last 5 years are OK, older no because it takes too long to get access and download).

• Hints are made as to what images are useful:
  • Would this be possible?
  • The description is not always the best place to look for hint but for example one could look for bolus injection to make sure contrast agent was used.

• Transfer is specified (to be discussed at next meeting)
  • Target location
  • Set up XNAT to receive image

• Request is queued (to be discussed at next meeting)
  • Log of transfer is available
  • Notification that transfer is complete is made