Difference between revisions of "DBP3:Utah:SlicerModuleAutoScar"

From NAMIC Wiki
Jump to: navigation, search
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
__NOTOC__
 
__NOTOC__
===CARMA Automatic Left Atrial Scar===
+
===CMR Toolkit Automatic Left Atrial Scar===
  
 
{|
 
{|
Line 17: Line 17:
 
Type: CLI
 
Type: CLI
  
Category: CARMA
+
Category: Cardiac MRI Toolkit
  
 
</div>
 
</div>
Line 24: Line 24:
  
 
==Module Description==
 
==Module Description==
Determines Left Atrial Scar Automatically given the wall segmentation, in a post-ablation LGE-MRI. For details see: [http://healthsciences.utah.edu/carma/research/publications/pdf/automatic_lawall_scar_segmentation.pdf| Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diagnosis, Feb 2012.]
+
This module determines left atrial scar automatically given the wall segmentation, in a post-ablation LGE-MRI. For details see: [http://healthsciences.utah.edu/carma/research/publications/pdf/automatic_lawall_scar_segmentation.pdf Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diagnosis, Feb 2012.]
  
 
</div>
 
</div>
Line 36: Line 36:
 
* This module automatically classifies scar tissue in post ablation DE-MRIs
 
* This module automatically classifies scar tissue in post ablation DE-MRIs
  
* [http://wiki.na-mic.org/Wiki/index.php?title=CARMA-LA-Scar_TutorialContestSummer2012 Tutorial]
+
* [http://wiki.na-mic.org/Wiki/index.php?title=CARMA-LA-Scar_TutorialContestSummer2012 CARMA Automatic Left Atrial Scar Tutorial]
  
 
===Quick Tour of Features and Use===
 
===Quick Tour of Features and Use===
Line 54: Line 54:
 
== Development ==
 
== Development ==
  
===Known bugs===
+
===Source Code & Documentation===
  
Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker.
+
The source code for this module can be found at the [https://github.com/carma-center/carma_slicer_extension/ GitHub repository].
 
 
===Usability issues===
 
 
 
Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker. Please select the '''usability issue category''' when browsing or contributing.
 
 
 
===Source code & documentation===
 
 
 
Customize following [http://www.na-mic.org/ViewVC/index.cgi/ links] for your module.
 
 
 
[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by doxygen.
 
  
 
</div>
 
</div>
Line 73: Line 63:
  
 
== More Information ==  
 
== More Information ==  
 
===Acknowledgment===
 
Include funding and other support here.
 
  
 
===References===
 
===References===
[http://healthsciences.utah.edu/carma/research/publications/pdf/automatic_lawall_scar_segmentation.pdf| Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diagnosis, Feb 2012.]
+
[http://healthsciences.utah.edu/carma/research/publications/pdf/automatic_lawall_scar_segmentation.pdf Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diagnosis, Feb 2012.]
  
 
</div>
 
</div>
 
</div>
 
</div>

Latest revision as of 19:54, 29 July 2013

Home < DBP3:Utah:SlicerModuleAutoScar

CMR Toolkit Automatic Left Atrial Scar

Automatic Left Atrial Scar

Authors, Collaborators & Contact

  • CARMA Center, University of Utah: Alan Morris, Josh Cates, Rob MacLeod

General Information

Module Type & Category

Type: CLI

Category: Cardiac MRI Toolkit

Module Description

This module determines left atrial scar automatically given the wall segmentation, in a post-ablation LGE-MRI. For details see: Perry, D. et al. "Automatic classification of scar tissue...", Proceedings of SPIE Medical Imaging: Computer Aided Diagnosis, Feb 2012.

Usage

Examples, Use Cases & Tutorials

  • This module automatically classifies scar tissue in post ablation DE-MRIs

Quick Tour of Features and Use

The following are the inputs and outputs

  • MRI image : Select the DE-MRI image
  • LA wall mask : Select the label map for the left atrial wall
  • Blood Pool mask : Select the label map for the blood pool
  • Result : The output label map denoting scar

Development

Source Code & Documentation

The source code for this module can be found at the GitHub repository.