View source for DBP:Harvard:Software:Bugs:Cingulum Bundle Fibers

* We've been testing Raul's "Find Tracts through ROI" button with the cingulum bundle.
* Five different "Seed ROIs" have been tested
** original cingulum bundle ROI
** ROI dilated 3X, 5X, 7X, and 9X
* For "Find Tracts through ROI", we use the original cingulum bundle ROI, and test the "Sensitivity" feature (Sensitivity = 1, 20, 40, 60, 80 or 100).

<br />

* [[DBP:Harvard:Software:Bugs:Cingulum_Bundle_Fibers:CaseD116|'''caseD116''']]
* [[DBP:Harvard:Software:Bugs:Cingulum_Bundle_Fibers:CaseD0688|'''caseD0688''']]
* [[DBP:Harvard:Software:Bugs:Cingulum_Bundle_Fibers:CaseD00724|'''caseD00724''']]

<br />

{| style="border: thin solid gray; text-align: center; position: relative; left: 20px"
|+  Cingulum Bundle: '''<nowiki># of tracts / mean FA</nowiki>''' with varying sensitivity and seed ROI size
|-
!
!
! colspan="5" | ROI Dilations
|- style="border-bottom: thin solid black"
! width="75" | Case
! width="80" | Sensitivity
! width="100" | ______0______
! width="100" | ______3______
! width="100" | ______5______
! width="100" | ______7______
! width="100" | ______9______
! # of tracts (chart)
! mean FA (chart)
|- style="background: #E8E8E8"
! rowspan="6" | D8
| 1
| 471 / 516.35
| 1093 / 484.37
| 1330 / 482.86
| 1525 / 483.99
| rowspan="6" | n/a
| style="background: white" rowspan="6" | [[Image:CaseD8_cingulum.png|thumb|right|180px|Click for larger image]]
| style="background: white" rowspan="6" | [[Image:CaseD8_meanFA.png|thumb|right|180px|Click for larger image]]
|- style="background: #E8E8E8"
| 20
| 431 / 521.79
| 785 / 502.48
| 939 / 501.26
| 1070 / 501.97
|- style="background: #E8E8E8"
| 40
| 378 / 529.08
| 653 / 513.51
| 780 / 512.50
| 896 / 512.59
|- style="background: #E8E8E8"
| 60
| 334 / 537.88
| 544 / 528.13
| 647 / 527.93
| 742 / 527.94
|- style="background: #E8E8E8"
| 80
| 239 / 548.34
| 369 / 542.82
| 455 / 542.33
| 534 / 541.41
|- style="background: #E8E8E8"
| 100
| 68 / 560.73
| 107 / 552.05
| 130 / 554.11
| 149 / 553.84
|-
! rowspan="6" | D20
| 1
| 457 / 548.49
| 1074 / 515.16
| 1239 / 511.81
| 1380 / 511.21
| rowspan="6" | n/a
| rowspan="6" | [[Image:CaseD20_cingulum.png|thumb|right|180px|Click for larger image]]
| rowspan="6" | [[Image:CaseD20_meanFA.png|thumb|right|180px|Click for larger image]]
|-
| 20
| 401 / 555.62
| 693 / 536.23
| 767 / 534
| 830 / 534.28
|-
| 40
| 333 / 563.69
| 508 / 552.64
| 563 / 550.83
| 611 / 550.76
|-
| 60
| 280 / 572.97
| 382 / 570.23
| 420 / 568.32
| 462 / 567.69
|-
| 80
| 158 / 594.37
| 208 / 592.16
| 227 / 590.60
| 253 / 589.32
|-
| 100
| 31 / 609.01
| 33 / 607.44
| 35 / 608.20
| 36 / 608.19
|- style="background: #E8E8E8"
! rowspan="4" | D33
| 1
| 118 / 443.39
| 367 / 416.24
| 474 / 415.46
| 559 / 415.63
| 636 / 416.38
| style="background: white" rowspan="4" | [[Image:CaseD33_cingulum.png|thumb|right|180px|Click for larger image]]
| style="background: white" rowspan="4" | [[Image:CaseD33_meanFA.png|thumb|right|180px|Click for larger image]]
|- style="background: #E8E8E8"
| 20
| 57 / 463.42
| 114 / 443.9
| 133 / 439.16
| 144 / 435.51
| 149 / 435.44
|- style="background: #E8E8E8"
| 40
| 32 / 474.96
| 44 / 473.92
| 47 / 471.92
| 48 / 470.97
| 49 / 470.33
|- style="background: #E8E8E8"
| 60
| 2 / 444.76
| 2 / 444.76
| 2 / 444.76
| 3 / 461.94
| 2 / 444.76
|-
! rowspan="6" |
[[DBP:Harvard:Software:Bugs:Cingulum_Bundle_Fibers:CaseD116|D116]]<br /><div><font size="smaller">(Click for pictures)</font></div>
| 1
| 550 / 477.75
| 1278 / 450.78
| 1506 / 449.22
| 1626 / 448.68
| rowspan="6" | n/a
| rowspan="6" | [[Image:CaseD116_cingulum.png|thumb|right|180px|Click for larger image]]
| rowspan="6" | [[Image:CaseD116_meanFA.png|thumb|right|180px|Click for larger image]]
|-
| 20
| 483 / 481.25
| 889 / 460.19
| 1003 / 458.79
| 1049 / 458.67
|-
| 40
| 434 / 485.93
| 699 / 472.90
| 766 / 472.60
| 797 / 472.31
|-
| 60
| 364 / 492.67
| 519 / 486.77
| 560 / 487.22
| 581 / 486.70
|-
| 80
| 195 / 497.90
| 277 / 493.48
| 297 / 494.47
| 306 / 494.03
|-
| 100
| 111 / 512.50
| 137 / 511.75
| 149 / 512.97
| 151 / 513.14
|- style="background: #E8E8E8"
! rowspan="5" | D124
| 1
| 317 / 542.15
| 820 / 512.38
| 983 / 508.64
| 1085 / 508.58
| 1171 / 507.86
| style="background: white" rowspan="5" | [[Image:CaseD124_cingulum.png|thumb|right|180px|Click for larger image]]
| style="background: white" rowspan="5" | [[Image:CaseD124_meanFA.png|thumb|right|180px|Click for larger image]]
|- style="background: #E8E8E8"
| 20
| 263 / 553.69
| 546 / 534.07
| 625 / 531.83
| 684 / 531.23
| 721 / 530.97
|- style="background: #E8E8E8"
| 40
| 200 / 558.85
| 387 / 547.98
| 442 / 545.54
| 483 / 544.48
| 509 / 544.90
|- style="background: #E8E8E8"
| 60
| 156 / 565.35
| 282 / 563.41
| 317 / 562.53
| 351 / 560.39
| 376 / 560.12
|- style="background: #E8E8E8"
| 80
| 92 / 579.77
| 160 / 583.86
| 180 / 582.20
| 201 / 578.87
| 219 / 577.80
|-
! rowspan="6" |
[[DBP:Harvard:Software:Bugs:Cingulum_Bundle_Fibers:CaseD0688|D0688]]<br /><div><font size="smaller">(Click for pictures)</font></div>
| 1
| 386 / 580.04
| 907 / 540.97
| 1035 / 535.57
| 1111 / 532.95
| 1187 / 531.72
| rowspan="6" | [[Image:CaseD0688_cingulum.png|thumb|right|180px|Click for larger image]]
| rowspan="6" | [[Image:CaseD0688_meanFA.png|thumb|right|180px|Click for larger image]]
|-
| 20
| 324 / 586.58
| 527 / 569.78
| 567 / 567.73
| 601 / 564.92
| 643 / 562.94
|-
| 40
| 259 / 594.98
| 367 / 586.04
| 395 / 583.89
| 422 / 580.38
| 458 / 577.70
|-
| 60
| 200 / 606.97
| 263 / 602.30
| 276 / 601.30
| 283 / 600.73
| 300 / 601.02
|-
| 80
| 173 / 611.98
| 221 / 610.22
| 230 / 609.62
| 235 / 609.23
| 248 / 609.28
|-
| 100
| 49 / 643.65
| 63 / 641.95
| 63 / 641.51
| 64 / 640.41
| 73 / n/a
|- style="background: #E8E8E8"
! rowspan="5" | D0608
| 1
| 245 / 553.34
| 632 / 516.35
| 743 / 510.40
| 830 / 506.39
| 888 / 503.73
| style="background: white" rowspan="5" | [[Image:CaseD0608_cingulum.png|thumb|right|180px|Click for larger image]]
| style="background: white" rowspan="5" | [[Image:CaseD0608_meanFA.png|thumb|right|180px|Click for larger image]]
|- style="background: #E8E8E8"
| 20
| 219 / 558.87
| 402 / 546.95
| 452 / 543.83
| 498 / 540.55
| 523 / 539.16
|- style="background: #E8E8E8"
| 40
| 155 / 577.74
| 270 / 568.72
| 299 / 566.52
| 325 / 564.14
| 341 / 562.46
|- style="background: #E8E8E8"
| 60
| 111 / 591.73
| 180 / 586.29
| 198 / 584.90
| 215 / 582.39
| 223 / 580.55
|- style="background: #E8E8E8"
| 80
| 25 / 608.98
| 41 / 603.72
| 46 / 598.57
| 51 / 597.42
| 55 / 592.95
|-
! rowspan="5" | D0671
| 1
| 294 / 554.50
| 715 / 516.65
| 851 / 512.52
| 975 / 514.46
| 1093 / 516.78
| rowspan="5" | [[Image:CaseD0671_cingulum.png|thumb|right|180px|Click for larger image]]
| rowspan="5" | [[Image:CaseD0671_meanFA.png|thumb|right|180px|Click for larger image]]
|-
| 20
| 259 / 561.82
| 420 / 549.54
| 476 / 548.07
| 546 / 549.58
| 616 / 550.52
|-
| 40
| 222 / 568.53
| 317 / 567.41
| 354 / 567.27
| 410 / 568.23
| 467 / 569.23
|-
| 60
| 172 / 577.87
| 234 / 577.87
| 263 / 577.53
| 309 / 578.57
| 356 / 579.22
|-
| 80
| 99 / 582.74
| 137 / 583.76
| 157 / 583.63
| 185 / 583.85
| 215 / 583.14
|- style="background: #E8E8E8"
! rowspan="6" |
[[DBP:Harvard:Software:Bugs:Cingulum_Bundle_Fibers:CaseD00724|D00724]]<br /><div><font size="smaller">(Click for pictures)</font></div>
| 1
| 320 / 542.19
| 806 / 508.12
| 919 / 503.66
| 986 / 502.21
| 1026 / 499.85
| style="background: white" rowspan="6" | [[Image:CaseD00724_cingulum.png|thumb|right|180px|Click for larger image]]
| style="background: white" rowspan="6" | [[Image:CaseD00724_meanFA.png|thumb|right|180px|Click for larger image]]
|- style="background: #E8E8E8"
| 20
| 276 / 550.80
| 572 / 531.10
| 626 / 529.52
| 662 / 526.83
| 686 / 523.65
|- style="background: #E8E8E8"
| 40
| 240 / 560.47
| 448 / 548.21
| 485 / 547.31
| 516 / 543.25
| 539 / 538.67
|- style="background: #E8E8E8"
| 60
| 169 / 580.79
| 300 / 571
| 326 / 569.75
| 341 / 568.3
| 342 / 568.47
|- style="background: #E8E8E8"
| 80
| 107 / 598.37
| 170 / 594.62
| 182 / 594.21
| 189 / 592.93
| 190 / 593.01
|- style="background: #E8E8E8"
| 100
| 44 / 639.40
| 67 / 635.85
| 72 / 636.14
| 72 / 635.34
| 71 / 636.69
|-
! rowspan="6" | D00802
| 1
| 350 / 554.78
| 842 / 524.11
| 983 / 518.72
| 1071 / 515.86
| rowspan="6" | n/a
| rowspan="6" | [[Image:CaseD00802_cingulum.png|thumb|right|180px|Click for larger image]]
| rowspan="6" | [[Image:CaseD00802_meanFA.png|thumb|right|180px|Click for larger image]]
|-
| 20
| 261 / 569.89
| 442 / 551.73
| 478 / 549.60
| 495 / 548.11
|-
| 40
| 167 / 588.24
| 236 / 578.3
| 251 / 577.29
| 257 / 576.44
|-
| 60
| 108 / 594.69
| 141 / 587.97
| 152 / 586.53
| 154 / 585.93
|-
| 80
| 63 / 596.55
| 75 / 591.59
| 80 / 590.32
| 81 / 590.02
|-
| 100
| 31 / 600.62
| 32 / 601.09
| 32 / 601.09
| 32 / 601.09
|}

'''Notes:'''

* All values are for the left side
* Where no values are listed for Sensitivity of 80 or 100, increasing the sensitivity produced no change in the fibers
* 'n/a' denotes conditions that caused Slicer to crash

<br />

<br />

<br />

<br />

{| border="1"
| width="50" | '''Case #'''
| width="50" | ''''''
| width="50" | '''Sensitivity'''
| width="50" | '''Seed ROI<br />'''
| width="50" | '''Seed Dilated ROI (5)<br />'''
| width="50" | '''Seed Dilated ROI (7)<br />'''
|-
|
<br />
|-
| rowspan="14" | D20
| rowspan="6" | Right
| 1
| 505
| 1380
| 1552
|-
| 20
| 448
| 938
| 1041
|-
| 40
| 388
| 769
| 864
|-
| 60
| 273
| 543
| 599
|-
| 80
| 186
| 388
| 424
|-
| 100
| 114
| 202
| 229
|-
| colspan="5" |
|-
|-
| rowspan="6" | Left
| 1
| 457
| 1238
| 1379
|-
| 20
| 400
| 766
| 829
|-
| 40
| 332
| 562
| 610
|-
| 60
| 279
| 419
| 461
|-
| 80
| 157
| 227
| 253
|-
| 100
| 30
| 35
| 36
|-
| colspan="6" |
|-
| rowspan="14" | D00724
| rowspan="6" | Right
| 1
| 405
| 1119
| 1208
|-
| 20
| 347
| 748
| 805
|-
| 40
| 295
| 606
| 644
|-
| 60
| 254
| 487
| 519
|-
| 80
| 194
| 340
| 368
|-
| 100
| 65
| 120
| 127
|-
| colspan="5" |
|-
|-
| rowspan="6" | Left
| 1
| 320
| 914
| 981
|-
| 20
| 276
| 624
| 660
|-
| 40
| 240
| 483
| 514
|-
| 60
| 169
| 324
| 339
|-
| 80
| 107
| 180
| 187
|-
| 100
| 44
| 71
| 71
|-
| colspan="6" |
|-
| rowspan="14" | D00802
| rowspan="6" | Right
| 1
| 453
| 1261
| 1324
|-
| 20
| 328
| 559
| 576
|-
| 40
| 251
| 385
| 402
|-
| 60
| 180
| 281
| 297
|-
| 80
| 121
| 170
| 176
|-
| 100
| 58
| 80
| 80
|-
| colspan="5" |
|-
|-
| rowspan="6" | Left
| 1
| 350
| 981
| 1068
|-
| 20
| 260
| 476
| 493
|-
| 40
| 166
| 250
| 256
|-
| 60
| 107
| 151
| 153
|-
| 80
| 62
| 80
| 81
|-
| 100
| 30
| 32
| 32
|-
| colspan="6" |
|-
| rowspan="14" | D33
| rowspan="6" | Right
| 1
| 160
| 606
| 728
|-
| 20
| 69
| 163
| 190
|-
| 40
| 15
| 37
| 49
|-
| 60
| 15*
| 37*
| 49*
|-
| 80
| 15*
| 37*
| 49*
|-
| 100
| 15*
| 37*
| 49*
|-
| colspan="5" |
|-
|-
| rowspan="6" | Left
| 1
| 118
| 471
| 557
|-
| 20
| 56
| 132
| 144
|-
| 40
| 31
| 47
| 48
|-
| 60
| 2
| 2
| 2
|-
| 80
| 2*
| 2*
| 2*
|-
| 100
| 2*
| 2*
| 2*
|-
| colspan="6" |
|-
| rowspan="14" | D124
| rowspan="6" | Right
| 1
| 250
| 797
| 899
|-
| 20
| 198
| 512
| 576
|-
| 40
| 150
| 356
| 399
|-
| 60
| 120
| 251
| 280
|-
| 80
| 90
| 161
| 182
|-
| 100
| 90*
| 161*
| 182*
|-
| colspan="5" |
|-
|-
| rowspan="6" | Left
| 1
| 317
| 982
| 1084
|-
| 20
| 263
| 625
| 684
|-
| 40
| 200
| 442
| 483
|-
| 60
| 156
| 317
| 351
|-
| 80
| 92
| 180
| 201
|-
| 100
| 92*
| 180*
| 201*
|}