Difference between revisions of "DCBIA meetings"
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== Training == | == Training == | ||
* Start working on this [https://docs.google.com/document/d/1TRVCUd6eVZj5UXehl-rttnvbNSe3pmHe9zJfXCqUqrI/edit Training tutorials and excercises] | * Start working on this [https://docs.google.com/document/d/1TRVCUd6eVZj5UXehl-rttnvbNSe3pmHe9zJfXCqUqrI/edit Training tutorials and excercises] | ||
| + | |||
| + | == Self-test information == | ||
| + | For the test one I wrote and we ran together, it was based on this tutorial: | ||
| + | http://www.slicer.org/slicerWiki/images/8/80/WhiteMatterExplorationTutorial_SoniaPujol_2013.pdf | ||
| + | linked from: | ||
| + | http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Training#Slicer4_Neurosurgical_Planning_Tutorial | ||
| + | The self test code: | ||
| + | http://viewvc.slicer.org/viewvc.cgi/Slicer4/trunk/Modules/Loadable/Markups/Testing/Python/NeurosurgicalPlanningTutorialMarkupsSelfTest.py?view=log | ||
| + | |||
| + | The application level self tests are in: | ||
| + | http://viewvc.slicer.org/viewvc.cgi/Slicer4/trunk/Applications/SlicerApp/Testing/Python/ | ||
| + | |||
| + | Instructions on how to create a new self test: | ||
| + | http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/SelfTestModule | ||
== Organization == | == Organization == | ||
| Line 28: | Line 42: | ||
* Planing for [http://www.aadronline.org/i4a/pages/index.cfm?pageid=3507 AADR 2015 ] in Boston (March) | * Planing for [http://www.aadronline.org/i4a/pages/index.cfm?pageid=3507 AADR 2015 ] in Boston (March) | ||
* Ann Arbor in August for Francois (around August 9th) | * Ann Arbor in August for Francois (around August 9th) | ||
| + | * January Salt Lake January 6th to 10th 2015 | ||
=== Meetings Weds June 24th === | === Meetings Weds June 24th === | ||
* Francois: 3dMeshMetric and ModeltoModelCorrespondence. 3dMeshMetric might not be an extension, licensing problems. She uses GPL license (MeshValmet's license). Lab in Michigan uses ModeltoModelCorresponce & ShapePopulationViewer. It doesnt have a problem. | * Francois: 3dMeshMetric and ModeltoModelCorrespondence. 3dMeshMetric might not be an extension, licensing problems. She uses GPL license (MeshValmet's license). Lab in Michigan uses ModeltoModelCorresponce & ShapePopulationViewer. It doesnt have a problem. | ||
* Francois: Work on the correspondence checkbox in the ModeltoModelDistance module | * Francois: Work on the correspondence checkbox in the ModeltoModelDistance module | ||
| + | |||
| + | === Progress report === | ||
| + | * Personal report | ||
| + | * Updated publications | ||
| + | * Biosketch | ||
| + | * Personal Justification for each subcontract | ||
| + | * PHS 2590 [http://grants.nih.gov/grants/funding/2590/2590.htm forms] | ||
| + | |||
| + | === Notes in Francois' notebook === | ||
| + | [[Image:Photo1.jpg|800px]] | ||
| + | [[Image:Photo2.jpg|800px]] | ||
| + | [[Image:Photo3.jpg|800px]] | ||
| + | [[Image:Photo4.jpg|800px]] | ||
| + | |||
| + | === Currents work: James & Guido === | ||
| + | * Cross-sectional studies: maybe not meaningful measurements | ||
| + | * Longitudinal studies, not ready yet. | ||
| + | * Think about borrowing ideas from S. Durrleman's [ http://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_MICCAI_12.pdf Atlas building work ] | ||
| + | * Deformetrica - [ http://www.deformetrica.org/ Atlas building for shapes ] | ||
Revision as of 20:50, 26 June 2014
Home < DCBIA meetingsContents
CPE Lyon Interns 2014-15
Software development
- For Windows: Visual Studio C++, Visual Studio 2008 Express
- For Mac: Xcode, QtCreator
- For Linux: QtCreator
- Support in Michigan: Shawn Rawl, Francois to meet with IT
Training
- Start working on this Training tutorials and excercises
Self-test information
For the test one I wrote and we ran together, it was based on this tutorial: http://www.slicer.org/slicerWiki/images/8/80/WhiteMatterExplorationTutorial_SoniaPujol_2013.pdf linked from: http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Training#Slicer4_Neurosurgical_Planning_Tutorial The self test code: http://viewvc.slicer.org/viewvc.cgi/Slicer4/trunk/Modules/Loadable/Markups/Testing/Python/NeurosurgicalPlanningTutorialMarkupsSelfTest.py?view=log
The application level self tests are in: http://viewvc.slicer.org/viewvc.cgi/Slicer4/trunk/Applications/SlicerApp/Testing/Python/
Instructions on how to create a new self test: http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/SelfTestModule
Organization
- Tuesdays Skype meeting at (maybe) 2pm (starting July 16th)
- Google Hangouts every Tuesday (TBD time)
Projects
- Fiducial selection constrained to surfaces, C++ using VTK and the MRML, already in Slicer3. More to be discussed. FIRST STEP, to download Slicer3 play with fiducials, search in the code where that is done. (Lucie)
- Cropping module, initial stage just a cropping plane. FIRST STEP, Use the clipping model option to get familiar on how it works and being able to gather info from Slicer. (Julia)
Color tables
- Francois developed a little tutorial like document
- Scalar bars (display scalar range) are still 0-100 values in the Model module, but if you go to Colors Module the range is ok
- Lucia's student to try to re-generate research figures Tutorial
Next Meetings
- Not coming to Boston in Sept 2014
- Planing for AADR 2015 in Boston (March)
- Ann Arbor in August for Francois (around August 9th)
- January Salt Lake January 6th to 10th 2015
Meetings Weds June 24th
- Francois: 3dMeshMetric and ModeltoModelCorrespondence. 3dMeshMetric might not be an extension, licensing problems. She uses GPL license (MeshValmet's license). Lab in Michigan uses ModeltoModelCorresponce & ShapePopulationViewer. It doesnt have a problem.
- Francois: Work on the correspondence checkbox in the ModeltoModelDistance module
Progress report
- Personal report
- Updated publications
- Biosketch
- Personal Justification for each subcontract
- PHS 2590 forms
Notes in Francois' notebook
Currents work: James & Guido
- Cross-sectional studies: maybe not meaningful measurements
- Longitudinal studies, not ready yet.
- Think about borrowing ideas from S. Durrleman's [ http://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_MICCAI_12.pdf Atlas building work ]
- Deformetrica - [ http://www.deformetrica.org/ Atlas building for shapes ]
