Difference between revisions of "DICOM"

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=== DICOM Discussions ===
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===DICOM Discussions===
  
 
This page is a collection of thoughts and utilities for DICOM images, networking and processing.
 
This page is a collection of thoughts and utilities for DICOM images, networking and processing.
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Please keep rants about DICOM to a minimum...
 
Please keep rants about DICOM to a minimum...
  
==== Test PACS System ====
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<br />
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====DICOM conversion====
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 +
[https://www.slicer.org Slicer3D] can open most DICOM images, and is able to save data to simpler formats (like [http://teem.sourceforge.net/nrrd/format.html NRRD]). DICOM is a complicated format and it has been interpreted differently by different manufacturers. While DICOM images are typically uncompressed, it also supports arcane compression formats that may not be supported by all tools. Further, it is an evolving format with modern enhanced DICOM files being different from classic DICOM slices. Therefore, some tools may only be able to read a subset of DICOM images. The [https://github.com/rordenlab/dcm2niix dcm2niix] home page lists numerous DICOM conversion tools in the "Alternatives" section.
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<br />
 +
 
 +
====Test PACS System====
  
 
DCMTK provides a utility called [http://support.dcmtk.org/docs/dcmqrscp.html dcmqrdb] (formerly imagectn). It is fairly straightforward to configure.
 
DCMTK provides a utility called [http://support.dcmtk.org/docs/dcmqrscp.html dcmqrdb] (formerly imagectn). It is fairly straightforward to configure.
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  <nowiki>
 
  <nowiki>
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# Global section
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  # Global section
NetworkType = "tcp"
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  NetworkType = "tcp"
NetworkTCPPort = 4006
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  NetworkTCPPort = 4006
MaxPDUSize = 8192
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  MaxPDUSize = 8192
MaxAssociations = 20
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  MaxAssociations = 20
Display = "yes"
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  Display = "yes"
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# Allowed hosts
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  # Allowed hosts
# Make sure there are no spaces between the ()'s!!!!
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  # Make sure there are no spaces between the ()'s!!!!
HostTable BEGIN
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  HostTable BEGIN
aware = (aware,aware,4006)
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  aware = (aware,aware,4006)
HostTable END
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  HostTable END
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# Vender table ( Ignored )
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  # Vender table ( Ignored )
VendorTable BEGIN
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  VendorTable BEGIN
VendorTable END
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  VendorTable END
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# Application Entry Table
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  # Application Entry Table
# ApplicationTitle StorageArea Access Quota Peers
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  # ApplicationTitle StorageArea Access Quota Peers
AETable BEGIN
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  AETable BEGIN
practical /path/to/archive/Archive RW (500,1G) ANY
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  practical /path/to/archive/Archive RW (500,1G) ANY
AETable END
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  AETable END
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</nowiki>
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  </nowiki>
 +
 
 +
===Dan Blezek's Fetch DICOM Program===
  
=== Dan Blezek's Fetch DICOM Program ===
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Provides GUI for Query/Retrieve and dicom directory sorting and simple file viewing.
 +
[[Media:FetchDICOM-3.0.ZIP| Version 3.0 of FetchDICOM]]<br />[[Media:FetchDICOM-3.0.tar.gz| Linux version of FetchDICOM]] -- requires [http://dicom.offis.de/dcmtk.php.en dcmtk] to be installed.
  
Provides GUI for Query/Retrieve and dicom directory sorting.
 
[[Media:FetchDICOM-3.0.ZIP| Version 3.0 of FetchDICOM]]<br/>[[Media:FetchDICOM-3.0.tar.gz| Linux version of FetchDICOM]] -- requires [http://dicom.offis.de/dcmtk.php.en dcmtk] to be installed.
 
 
[[Media:FetchDICOM-2.1.zip| Version 2.1 of FetchDICOM]]<br />[[Media:FetchDICOM-Source.zip| Source for Version 2.x of FetchDICOM]]
 
[[Media:FetchDICOM-2.1.zip| Version 2.1 of FetchDICOM]]<br />[[Media:FetchDICOM-Source.zip| Source for Version 2.x of FetchDICOM]]
  
 
(This version is for Windows, but the code could easily be made for linux, mac etc if needed).
 
(This version is for Windows, but the code could easily be made for linux, mac etc if needed).

Latest revision as of 14:58, 11 March 2021

Home < DICOM

DICOM Discussions

This page is a collection of thoughts and utilities for DICOM images, networking and processing.

Please keep rants about DICOM to a minimum...


DICOM conversion

Slicer3D can open most DICOM images, and is able to save data to simpler formats (like NRRD). DICOM is a complicated format and it has been interpreted differently by different manufacturers. While DICOM images are typically uncompressed, it also supports arcane compression formats that may not be supported by all tools. Further, it is an evolving format with modern enhanced DICOM files being different from classic DICOM slices. Therefore, some tools may only be able to read a subset of DICOM images. The dcm2niix home page lists numerous DICOM conversion tools in the "Alternatives" section.


Test PACS System

DCMTK provides a utility called dcmqrdb (formerly imagectn). It is fairly straightforward to configure.

Command line


dcmqrscp --config config.txt

Configuration file (config.txt), see dcmqrcnf.txt for more details. Edit the HostTable and the AETable. Connections to "practical" in the example below will be placed in the directory /path/to/archive/Archive. "aware" is the only AE that is allowed to put data in this PACS system.

  
  # Global section
  NetworkType	=	"tcp"
  NetworkTCPPort	=	4006
  MaxPDUSize	=	8192
  MaxAssociations	=	20
  Display		=	"yes"
  
  # Allowed hosts
  # Make sure there are no spaces between the ()'s!!!!
  HostTable BEGIN
  aware = (aware,aware,4006)
  HostTable END
  
  # Vender table ( Ignored )
  VendorTable BEGIN
  VendorTable END
  
  # Application Entry Table
  # ApplicationTitle StorageArea Access Quota Peers
  AETable BEGIN
  practical /path/to/archive/Archive RW (500,1G) ANY
  AETable END
  
  

Dan Blezek's Fetch DICOM Program

Provides GUI for Query/Retrieve and dicom directory sorting and simple file viewing. Version 3.0 of FetchDICOM
Linux version of FetchDICOM -- requires dcmtk to be installed.

Version 2.1 of FetchDICOM
Source for Version 2.x of FetchDICOM

(This version is for Windows, but the code could easily be made for linux, mac etc if needed).