Difference between revisions of "Data:DBP2:UNC"

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(New page: Back to UNC DBP 2, DBP 2 Data __NOTOC__ == UNC Data == === Data Access === <put data access information here> === Data Description === <put data description...)
 
 
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=== Data Access ===
 
=== Data Access ===
  
<put data access information here>
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* [[Media:UNCData.tgz]]
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* There are 2 autistic children and 2 normal controls scanned at 2 years with follow up at 4 years. Face information (area containing nose, mouth, chin) has been manually removed from the sMRI data by using [http://www.itksnap.org/pmwiki/pmwiki.php itkSNAP] (3D brush).
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  - Group-Gender\Age    2 years old    4 years old
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  - Autistic male      5157-005-01    5157-005-02
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  - Autistic female    5074-004-01    5074-004-02
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  - Control male        5150-004-01    5150-004-02
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  - Control female      5128-004-01    5128-004-02
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* In each subject folder (????-???), there are two folders corresponding to each scan:
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** ????-???-01: Time 1 (scan at 2 years old)
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** ????-???-02: Time 2 (scan at 4 years old)
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* Each scan folder contains 5 files:
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** ????-???-??_10_T1.nrrd: T1-weigthed image
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** ????-???-??_10_t2_fit.nrrd: T2-weigthed image
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** ????-???-??_10_pd_fit.nrrd: PD-weigthed image
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** ????-???-??_10_t2_fit_hard.nrrd: Tissue segmentation label map image
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** ????-???-??_combSegHAVCPG_newHippo.nrrd: Subcortical structures segmentation
  
 
=== Data Description ===
 
=== Data Description ===
  
<put data description information here>
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* '''Structural MRI''': All scans are conducted on a 1.5 T Siemens scanner. Sequences include: a T1 weighted inversion recovery magnetization preparation (IR Prep) sequence with a slice thickness of 1.5 mms in the coronal plane, TE=5.4, TR=12.3, NEX=1, FOV=20 cm; flip angle = 40o; 256 X 192 matrix. PD/ T2 weighted fast spin-echo images will be acquired with the following parameters: 3.0 mm coronal slices, TE = 17/75, TR = 7200 ms, NEX = 1, FOV=20, 256 X 192 matrix.
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* '''Tissue segmentation''': Atlas-based automatic tissue segmentation via an Expectation-Maximization scheme
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* '''Subcortical Structures''': Left and Right manual segmentation of amygdala, caudate, hippocampus, lateral ventricles, pallidus, putamen
  
 
=== Data Contact ===
 
=== Data Contact ===
  
<put data contact information here>
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If you have any questions about the data, please contact Heather Cody Hazlett (heather_cody at med.unc.edu) or Clement Vachet (cvachet at email.unc.edu)

Latest revision as of 15:52, 4 February 2010

Home < Data:DBP2:UNC
Back to UNC DBP 2, DBP 2 Data

UNC Data

Data Access

  • Media:UNCData.tgz
  • There are 2 autistic children and 2 normal controls scanned at 2 years with follow up at 4 years. Face information (area containing nose, mouth, chin) has been manually removed from the sMRI data by using itkSNAP (3D brush).
 - Group-Gender\Age    2 years old    4 years old
 - Autistic male       5157-005-01    5157-005-02
 - Autistic female     5074-004-01    5074-004-02
 - Control male        5150-004-01    5150-004-02
 - Control female      5128-004-01    5128-004-02
  • In each subject folder (????-???), there are two folders corresponding to each scan:
    •  ????-???-01: Time 1 (scan at 2 years old)
    •  ????-???-02: Time 2 (scan at 4 years old)
  • Each scan folder contains 5 files:
    •  ????-???-??_10_T1.nrrd: T1-weigthed image
    •  ????-???-??_10_t2_fit.nrrd: T2-weigthed image
    •  ????-???-??_10_pd_fit.nrrd: PD-weigthed image
    •  ????-???-??_10_t2_fit_hard.nrrd: Tissue segmentation label map image
    •  ????-???-??_combSegHAVCPG_newHippo.nrrd: Subcortical structures segmentation

Data Description

  • Structural MRI: All scans are conducted on a 1.5 T Siemens scanner. Sequences include: a T1 weighted inversion recovery magnetization preparation (IR Prep) sequence with a slice thickness of 1.5 mms in the coronal plane, TE=5.4, TR=12.3, NEX=1, FOV=20 cm; flip angle = 40o; 256 X 192 matrix. PD/ T2 weighted fast spin-echo images will be acquired with the following parameters: 3.0 mm coronal slices, TE = 17/75, TR = 7200 ms, NEX = 1, FOV=20, 256 X 192 matrix.
  • Tissue segmentation: Atlas-based automatic tissue segmentation via an Expectation-Maximization scheme
  • Subcortical Structures: Left and Right manual segmentation of amygdala, caudate, hippocampus, lateral ventricles, pallidus, putamen

Data Contact

If you have any questions about the data, please contact Heather Cody Hazlett (heather_cody at med.unc.edu) or Clement Vachet (cvachet at email.unc.edu)