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| − | ''This workshop is currently being planned. Please check back here for updates over the next few days. [[User:Tkapur|Tkapur]] 01:54, 2 Dec 2004 (EST)''
| + | Presentations to be used in the workshop (work in progress [[User:Tkapur|Tkapur]] 12:14, 2 Dec 2004 (EST)) |
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| − | == Date, Time, Venue ==
| + | Introduction |
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| − | Time: December 9-10, 2004 (8am to 5:30pm both days)
| + | * [[Media:Workshop_Dec9-10_Introduction.ppt|Introduction and Objectives of the Workshop]] (Tina Kapur) |
| | + | * [[Media:OpenSoftwarePhilosophy.ppt|Open Software Development Philosophy]] (Luis Ibanez) |
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| − | Venue: Demo Room, [http://splweb.bwh.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street, Boston, MA]
| + | Brief Overview of Algorithms Planned at MGH, UNC, MIT, and Georgia Tech |
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| − | == Goals of workshop ==
| + | * [[Media:Dec2004NamicUNCslides.ppt| Algorithms Planned at UNC for NAMIC Year 1]] (Martin Styner) |
| | + | * [[Media:Dec2004NamicMITslides.ppt|Algorithms planned at MIT for Year 1 of NAMIC]] (Lauren O'Donnell) |
| | + | * [[Media:Dec2004NamicGaTechslides-updated.ppt| Algorithms Planned at GATech for NAMIC Year 1]] (Delphine Nain) |
| | + | * Algorithms planned at MGH for NAMIC Year 1 (Dave Tuch) |
| | + | * [http://www.loni.ucla.edu/twiki/pub/Pipeline/PresentationSlides/pipeline.041210.ppt Introduction to LONI Pipeline] (Michael Pan) |
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| − | * To provide hands-on training in ITK and Slicer to students and engineers from Cores 1 & 2
| + | ITK Session [[User:Ibanez|Luis Ibanez]] |
| − | * To establish contact between ITK and Slicer experts and the group of students and developers of the NAMIC community.
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| − | * To obtain feedback on how ITK and Slicer satisfy the needs of the algorithms that are being developed in Core 1.
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| − | == Agenda ==
| + | * [[Media:Insight-Architecture.ppt|Insight-Architecture.ppt]] |
| | + | * [[Media:Insight-Filtering.ppt|Insight-Filtering.ppt]] |
| | + | * [[Media:Insight-Segmentation.ppt|Insight-Segmentation.ppt]] |
| | + | * [[Media:Insight-VTK.ppt|Insight-VTK.ppt]] |
| | + | * [[Media:Insight-Registration.ppt|Insight-Registration.ppt]] |
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| − | '''Thursday Dec 9:''' ''''''
| + | Slicer Session (Steve Pieper, Raul San Jose Estepar, C-F Westin) |
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| − | * 7:45-8am: Breakfast | + | * [[Media:2004-12-08-10-SP-Slicer-Overview.ppt|Slicer-Overview.ppt]] |
| − | * 8:00-8:15am: [[Image:Workshop_Dec9-10_Introduction.ppt|Image:Workshop Dec9-10 Introduction.ppt]](Tina Kapur)
| + | * [[Media:WestinNAMIC-Dec10-2004.pdf|DTI Application in Slicer]] |
| − | * 8:15am-8:30am: [[Image:OpenSoftwarePhilosophy.ppt|Image:OpenSoftwarePhilosophy.ppt]] (Luis Ibanez)
| + | * [[Media:2004-12-08-10-SP-Build-Deploy.ppt|Build-Deploy.ppt]] |
| − | * 8:30-8:40am: [[Image:Dec2004NamicUNCslides.ppt|Image:Dec2004NamicUNCslides.ppt]] (Martin Styner)
| + | * [[Media:2004-12-08-10-SP-Custom-Modules.ppt|Custom-Modules.ppt]] |
| − | * 8:40-8:50am: [[Image:Dec2004NamicMITslides.ppt|Image:Dec2004NamicMITslides.ppt]] (Lauren O'Donnell)
| + | * [[Media:Slicer-ITK.ppt|Slicer-ITK.ppt]] |
| − | * 8:50-9:00am: [[Image:Dec2004NamicGaTechslides-updated.ppt|Image:Dec2004NamicGaTechslides-updated.ppt]]
| + | * [[Media:2004-12-08-10-SP-DeveloperTools.ppt|Developer-Tools.ppt]] |
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| − | (Delphine Nain)
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| − | | |
| − | * 9am-9:10am: Introductions: all participants introduce themselves
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| − | * 9:10am-10:50am: [[Image:Insight-Architecture.ppt|Image:Insight-Architecture.ppt]] (Luis Ibanez)
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| − | ** Generic programming (e.g. STL)
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| − | ** Smart pointers
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| − | ** Exceptions
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| − | ** Commmand/Observers
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| − | * 11am-noon: [[Image:Insight-Filtering.ppt|Image:Insight-Filtering.ppt]] (Luis Ibanez)
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| − | ** Pixel-wise filters e.g. thresholding, sigmoid
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| − | * noon-1pm: lunch
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| − | * 1pm-2pm: [[Image:Insight-Filtering.ppt|Image:Insight-Filtering.ppt]] (Luis Ibanez)
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| − | ** Mathematical morphology
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| − | ** Noise reduction, curvature flow, anisotropic diffusion
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| − | * 2:10pm-4pm: [[Image:Insight-Segmentation.ppt|Image:Insight-Segmentation.ppt]] (Luis Ibanez)
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| − | ** Region growing, confidence, threshold, isolated
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| − | ** Watersheds
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| − | ** Level sets, fast marching, shape detection, geodesic active contours, canny, threshold, laplacian
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| − | * 4:10pm-5:10pm:[[Image:Insight-VTK.ppt|Image:Insight-VTK.ppt]] (Luis Ibanez)
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| − | ** Exercise ITK+VTK
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| − | * 5:10pm-5:30pm: wrap up for day, plans for next day
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| − | * 6:00pm: Group dinner. Meet at 1249, if you would like to join.
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| − | | |
| − | '''Friday Dec 10:'''
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| − | | |
| − | * 8am-9am:[[Image:Insight-VTK.ppt|Image:Insight-VTK.ppt]] (Luis Ibanez)
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| − | ** Exercise ITK+VTK
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| − | * 9am-10am: [[Image:Insight-Registration.ppt|Image:Insight-Registration.ppt]] (Luis Ibanez)
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| − | ** Metrics
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| − | ** Transforms
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| − | ** Optimizers
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| − | * 10:10am-10:30am: [http://www.loni.ucla.edu/twiki/pub/Pipeline/PresentationSlides/pipeline.041210.ppt Introduction to LONI Pipeline] (Michael Pan)
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| − | * 10:30-10:40am: [[Image:Namic-workshop-mgh.ppt|Image:Namic-workshop-mgh.ppt]] ([[DavidTuch]])
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| − | * 10:50am-11:30am: Slicer overview (Steve Pieper) [[Media:2004-12-08-10-SP-Slicer-Overview.ppt|Slicer-Overview.ppt]]
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| − | * 11:30am-noon: [[Image:WestinNAMIC-Dec10-2004.pdf|Image:WestinNAMIC-Dec10-2004.pdf]] (C-F Westin) | |
| − | * 12-12:30pm: lunch
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| − | * 12:30pm-3:30pm:
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| − | ** [[Media:2004-12-08-10-SP-Build-Deploy.ppt|Build-Deploy.ppt]] (Steve Pieper)
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| − | ** [[Media:2004-12-08-10-SP-Custom-Modules.ppt|Custom-Modules.ppt]] (Steve Pieper)
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| − | ** [[Media:Slicer-ITK.ppt|Slicer and ITK]] (Raul San Jose)
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| − | ** [[Media:2004-12-08-10-SP-DeveloperTools.ppt|Developer-Tools.ppt]] (Steve Pieper)
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| − | * 3:30pm-3:45pm: wrap up
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| − | == List of Attendees ==
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| − | | |
| − | The list of participants for this workshop is [[Dissemination:Workshop_Dec9:10_Attendees_List|here]]. The workshop is now closed. We appreciate the enthusiastic responses we got for the workshop, and will be arranging a followup workshop for the many others who we were not able to accomodate this time. Stay tuned for the dates for the following workshop.
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| − | == Preparation for Workshop -- ''Important Information for all attendees'' ==
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| − | All attendees are required to complete the following items prior to the workshop. Support will be provided as requested.
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| − | * Email [[Dissemination:Workshop_Dec9-10_Boston_Info_Needed_from_Attendees|answers to some questions about your programming background, NAMIC project, development environment etc.]] to [[Tkapur%22at%22epiphanymedical.com]] as soon as possible. This will help us customize the workshop to the goals and needs of the group.
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| − | * Please install ITK and Slicer as soon as possible, preferably on a machine that you will be bringing to the workshop, and definitely before the course.
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| − | ** Install ITK using the online ITK Tutorial [http://www.itk.org/CourseWare/Training/GettingStartedI-WebPage/img0.html Getting Started I]. This tutorial includes how to download, configure and install ITK, as well as how to run the first minimal examples.
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| − | ** After installing ITK, download [[Image:ITKExercises.tgz|Image:ITKExercises.tgz]] that will be used in the workshop.
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| − | ** Install Slicer using the online tutorial [[Slicer:Slicer2.4_Getting_Started|Getting Started]].
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| − | We will be happy to assist anybody who may encounter difficulties in the process. As first point of contact, send an email to the NAMIC-developers mailing list (namic-developers "at" na-mic.org) which will be closely monitored by Luis Ibanez, Steve Pieper and other experts in ITK and Slicer. If everyone has completes these tutorials successfully we will be able to focus on how to focus on showing you how to create applications with ITK and Slicer during the workshop.
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| − | We will be available at 1249 Boylston on the afternoon before the workshop for anyone who has been unable to do the installation by that time.
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