Engineering:TCON 2010

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2010-02-11

Attendees: Jim, Katie, Curt, Casey, Tina, Xiaodong, Steve, Wendy, Dan, John, Dominik

Agenda:

• NA-MIC data migration is complete and the Downloads page has been brought out to the Wiki sidebar (http://www.na-mic.org/Wiki/index.php/Downloads)
  • Feedback is requested on the sidebar
  • Feedback is requested on the Downloads page
  • Feature request to track the downloads like it is done on the publication database.
  • Curt will work with John to add Meshing Module tutorial.
  • Dominik will try putting some data in midas to see how much context can be added.
  • John will check with Marek about Harvard data that had been on BIRN.
• Review of DBP2 webpages, which need updating

2010-02-04

Attendees: Xiaodong, Tina, Casey, John, Dan, Vince, Stephen, Nicole

Agenda:

• http://www.na-mic.org/Wiki/index.php/Downloads
• Head MRI, MRA, DTI from 100 healthy volunteers

DBP Tutorials should be listed at the top. Software should point to Slicer and the NA-MIC Kit. Data hosting is available on XNAT and Midas.

2010-01-28

Attendees: Xiaodong, Tina, John M, Katie, Nicole, Dominik, Vince, Casey

Agenda

• data update (john m): Discussion of Data & Tutorials on the following page. Discussion of where to put the data (XNAT or Midas).
  • example downloadable resources page: http://www.ncigt.org/pages/Downloads

• Iowa Data
  • Visible Human Datasets https://mri.radiology.uiowa.edu//visible_human_datasets.html

• Project Sikuli from CSAIL
  • Scripted UI interaction -- GUI testing http://groups.csail.mit.edu/uid/sikuli/

2010-01-21

Attendees: Jim, Katie, Nicole, Wendy, Curt, Ron, Dominic, Steve, Dan

• Update wiki pages in preparation for the review of the NA-MIC renewal

2010-01-14

Attendees: Katie Ben Casey Yin Tina Vince Jim Satra Nicole Lauren Hiro Fernando Chris Brian Dominik Ron

• Discussion of parallel processing using ipython for use with NA-MIC CT Colonography collaboration project. (confirmed).
  • As a follow up people may be interested in the Enthought webinar on this topic 3pm eastern on Jan 22, 2010.
  • Need real time processing speed. 10 fps for volume rendering. 5 minutes of image processing (down from 30 minutes)
  • 512x512x1000 voxels
  • GPU solutions or ipython solutions
  • Python package for accessing to Slicer internals in a headless mode, i.e. run Slicer internals from Python instead of running Python from within Slicer
  • iPython distinct from MPI (meet different needs)
  • Microsoft interest in iPython
• Jim fell on the sword to take minutes
• Follow up information from Fernando about the new version of ipython in development:
  • the docs for the in-testing ipython are at: http://ipython.scipy.org/doc/bzr.r1321/
  • and downloads in various formats are at: http://ipython.scipy.org/dist/testing/
  • Note: the files with .bzr.r1321 in the names are the relevant ones for today's call, NOT the 'nightly' ones.