Difference between revisions of "Engineering:WUSTL"

From NAMIC Wiki
Jump to: navigation, search
 
(2 intermediate revisions by one other user not shown)
Line 1: Line 1:
Back to [[Engineering:Main|NA-MIC Engineering]]
+
Back to [[Engineering:Main|NA-MIC Engineering]]
 
__NOTOC__
 
__NOTOC__
 
= Overview of Washington University Projects (PI: Dan Marcus) =
 
= Overview of Washington University Projects (PI: Dan Marcus) =
Line 16: Line 16:
 
== [http://www.xnat.org XNAT Enterprise] ==
 
== [http://www.xnat.org XNAT Enterprise] ==
  
XNAT is an open source imaging informatics platform designed to facilitate management and exploration of biomedical imaging and related data. XNAT includes a secure database backend and a rich web-based user interface. A REST API provides programmatic access to the image file repository and metadata. A more detailed description of XNAT can be found [http://www.xnat.org/xnat_neuroinformatics.pdf here].   
+
XNAT is an open source imaging informatics platform designed to facilitate management and exploration of biomedical imaging and related data. XNAT includes a secure database backend and a rich web-based user interface. XNAT 1.4 was released in May, 2010. A more detailed description of XNAT can be found [http://www.xnat.org here].   
  
The XNAT project is a joint venture that includes people and support from Washington University, Harvard University, Howard Hughes Medical Institute, the Biomedical Informatics Research Network (BIRN), NA-MIC, and a community of open source developers. [http://www.xnat.org More...]
+
Within the scope of NA-MIC, we are focusing on implementing a robust API for accessing image resources, including raw DICOM and a variety of other formats including NIFTI and NRRDSlicer will be coded to use this API for intereacting with XNAT repositories. The API will support a typical Slicer workflow which would include:
 
+
* querying for patients by various metadata
XNAT 1.4 is scheduled for release on March 1, 2010Release candidate 3 of this version is currently available for testing. 1.4 includes the full REST API, an improved user interface, and full DICOM integration.
+
* downloading desired patient studies into Slicer
 +
* manipulating the images in Slicer,  
 +
* uplodaing the manipulated images back to the XNAT repository
  
 
<hr>
 
<hr>
Line 28: Line 30:
 
XNAT Desktop (XND) is a desktop application for organizing, sharing, and distributing imaging and related files. It is operating system-independent, easily installed, and has no external dependencies. XND can be used to tag and upload data to XNAT Enterprise systems and to streamline workflows that utilize Slicer and other components of the NA-MIC Kit.  XND includes a built-in web server that allows it to act as a file server using the same REST [http://nrg.wikispaces.com/XNAT+Web+Services+API web services API] that is being implemented for XNAT Enterprise [http://www.xnat.org/xnd/ More...]  
 
XNAT Desktop (XND) is a desktop application for organizing, sharing, and distributing imaging and related files. It is operating system-independent, easily installed, and has no external dependencies. XND can be used to tag and upload data to XNAT Enterprise systems and to streamline workflows that utilize Slicer and other components of the NA-MIC Kit.  XND includes a built-in web server that allows it to act as a file server using the same REST [http://nrg.wikispaces.com/XNAT+Web+Services+API web services API] that is being implemented for XNAT Enterprise [http://www.xnat.org/xnd/ More...]  
  
XND v0.91 is currently available.  This version includes an work-in-progress user interface implementation that provides a look-and-feel and operations that more closely align with common medical imaging workstations.
+
XND will allow Slicer users to maintain local repositories of their data which will be fully integrated with enterprise XNAT systems.
  
 
<hr>
 
<hr>

Latest revision as of 22:04, 3 June 2014

Home < Engineering:WUSTL

Back to NA-MIC Engineering

Overview of Washington University Projects (PI: Dan Marcus)

The Neuroinformatics Research Group at Washington University is responsible for developing desktop and enterprise level data management software for research imaging studies. We work in close collaboration with Core 1 engineering investigators to implement seamless integration between our tools and the other components in the NA-MIC kit.


XNAT Enterprise
XNAT Desktop

Wash U Projects

XNAT Enterprise

XNAT is an open source imaging informatics platform designed to facilitate management and exploration of biomedical imaging and related data. XNAT includes a secure database backend and a rich web-based user interface. XNAT 1.4 was released in May, 2010. A more detailed description of XNAT can be found here.

Within the scope of NA-MIC, we are focusing on implementing a robust API for accessing image resources, including raw DICOM and a variety of other formats including NIFTI and NRRD. Slicer will be coded to use this API for intereacting with XNAT repositories. The API will support a typical Slicer workflow which would include:

  • querying for patients by various metadata
  • downloading desired patient studies into Slicer
  • manipulating the images in Slicer,
  • uplodaing the manipulated images back to the XNAT repository

XNAT Desktop

XNAT Desktop (XND) is a desktop application for organizing, sharing, and distributing imaging and related files. It is operating system-independent, easily installed, and has no external dependencies. XND can be used to tag and upload data to XNAT Enterprise systems and to streamline workflows that utilize Slicer and other components of the NA-MIC Kit. XND includes a built-in web server that allows it to act as a file server using the same REST web services API that is being implemented for XNAT Enterprise More...

XND will allow Slicer users to maintain local repositories of their data which will be fully integrated with enterprise XNAT systems.


XNAT Central

XNAT Central is a free, publicly accessible instance of the XNAT Enterprise system. It supports MRI, PET, CT, and a range of other imaging modalities. Researchers are invited to use XNAT Central to share their imaging studies with select colleagues or as open access projects under one of several licenses (public domain, creative commons, etc). More...

XNAT Central currently hosts a number of NA-MIC data sets, as described here.