Events:VT-NAMIC-NCBC-Collaboration-meeting-2009

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Logistics

  • Confirmed date: Friday, October 9, 2009, 9am-4pm (time is tentative, but room has been reserved, confirmed with Katie Mastrogiacomo)
  • Location: 1249 Boylston Street, 2nd floor conference room

Goals

  • To be completed or partially completed prior to the meeting by Andriy Fedorov and Ginger Li (Oct 7-8):
    • Provide necessary user- and developer-level Slicer training for Ginger
    • Understand the currently used processing workflow
    • Confirm reproducibility of the processing steps between VT and SPL
    • Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results (wiki page)
  • To be completed during the meeting
    • Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy)
    • Review the available data and current segmentation results
    • Discuss action timeline for the remaining part of the funded project period
    • Discuss publication plans

Agenda

  • Review, discuss and finalize the processing workflow (to be discussed and documented by Andriy Fedorov and Ginger Li prior to the meeting Oct 7-8)
    • atlas construction
    • image pre-processing
    • registration
    • segmentation
  • Review currents results
  • Identify Slicer components of the workflow that are ... working, broken, missing

Attendance

Open to all interested parties:

  1. Chris Wyatt
  2. Ginger Li
  3. Ron Kikinis
  4. Sandy Wells
  5. Andriy Fedorov

References

TODO: link these

  • notes on the current workflow
  • registration results
  • newly available Slicer modules (registration, mask detection, bias correction)
  • atlas construction paper by Styner's group