View source for Farsight nuclear segmentation as GoFigure plugin

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Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]]
Image:Hippocampus.jpg|Farsight nuclei segmentation
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==Key Investigators==
* Harvard Medical School: Arnaud Gelas, Sean Megason
* RPI: Badri Roysam, Raghav Padmanabhan

== Project ==

* GoFigure2 http://gofigure2.sourceforge.net
GoFigure2 is a software 

* Farsight http://www.farsight-toolkit.org/wiki/Main_Page
Farsight project is Developing Quantitative Tools for Studying Complex and Dynamic Biological Micro-environments from 4D/5D Microscopy Data

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<h3>Objective</h3>

* Enable GoFigure2 plugin mechanism
* Develop one GoFigure2's plugin from Farsight nuclear segmentation

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<h3>Approach, Plan</h3>

* Make a simple Image To Image plugin work into GoFigure2
* Download, build and install farsight
* Run Farsight nuclear segmentation as an executable
** Import results into GoFigure2 (see previous project)
* Make a plugin from this application

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<h3>Progress</h3>

* GoFigure2's Image to Image plugins can be 
** compiled
** loaded
** ran
* There is one bug when importing back the results of the plugin into GoFigure

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